SMTL ID : 2oyl.2 (1 other biounit)

Endo-glycoceramidase II from Rhodococcus sp.: cellobiose-like imidazole complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: N.213, V.216 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.216, A:V.216 NA.2: 2 residues within 4Å: Chain A: A.153, T.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.153, A:T.156

1 x IDC: (5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucopyranoside(Non-covalent)

IDC.3: 13 residues within 4Å: Chain A: S.54, K.57, H.126, D.128, A.146, I.147, N.149, W.169, N.223, E.224, Y.297, E.342, W.373 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.54, A:K.57, A:H.126, A:I.147, A:N.149, A:N.223, A:E.224, A:W.373 Water bridges: A:S.54, A:W.169 Salt bridges: A:K.57 pi-Stacking: A:Y.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caines, M.E. et al., The structural basis of glycosidase inhibition by five-membered iminocyclitols: the clan a glycoside hydrolase endoglycoceramidase as a model system. Angew.Chem.Int.Ed.Engl. (2007)

Release Date

2007-03-06

Peptides

Endoglycoceramidase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Endoglycoceramidase II

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