SMTL ID : 2oz3.2 (2 other biounits)

Crystal structure of L-Rhamnonate dehydratase from Azotobacter vinelandii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: W.107, D.108, Y.111, N.112, R.275, W.276 Chain B: K.42 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:K.42, A:N.112, A:R.275 Water bridges: A:R.275, A:R.275, A:R.275 GOL.2: 5 residues within 4Å: Chain B: V.154, R.155, Q.334 Chain D: K.42, Y.43 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.155, B:Q.334 Water bridges: B:R.155 GOL.3: 5 residues within 4Å: Chain B: W.107, D.108, N.112, R.275, W.276 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:N.112, B:R.275, B:R.275 Water bridges: B:N.112, B:N.112, C:D.311, C:D.311 GOL.4: 6 residues within 4Å: Chain C: D.108, N.112, R.275, W.276 Chain D: K.42, P.246 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:D.108, C:D.108, C:N.112, D:K.42 Water bridges: C:R.275 GOL.5: 9 residues within 4Å: Chain B: E.104, W.135, L.149, L.304 Chain C: L.149, L.150, G.151, L.304, R.333 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:E.104, B:L.149, C:R.333 GOL.6: 6 residues within 4Å: Chain C: K.42 Chain D: W.107, D.108, Y.111, N.112, R.275 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.108, D:N.112, D:R.275, D:R.275, C:K.42 GOL.7: 2 residues within 4Å: Chain D: E.104, L.304 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.104, D:L.149 GOL.8: 8 residues within 4Å: Chain B: K.239, M.265, L.316, F.338 Chain D: P.186, D.222, N.224, Y.225 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:Y.225, B:K.239, B:K.239 Water bridges: D:N.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal structure of L-Rhamnonate dehydratase from azotobacter vinelandii. To be Published

Release Date

2007-03-06

Peptides

Mandelate racemase/muconate lactonizing enzyme: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Mandelate racemase/muconate lactonizing enzyme

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