SMTL ID : 2p7h.1 (2 other biounits)

Crystal structure of a sam dependent methyl-transferase type 12 family protein (eca1738) from pectobacterium atrosepticum scri1043 at 1.85 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: C.175, R.184 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: V.164 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: A.132, E.133 Ligand excluded by PLIP CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain D: A.132, E.133 Ligand excluded by PLIP

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 7 residues within 4Å: Chain A: E.48, G.50, S.51, F.52, F.56, T.110, V.112 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.48, A:S.51, A:F.56, A:T.110, A:T.110 Water bridges: A:H.30, A:G.54, A:G.54, A:T.110 TRS.7: 8 residues within 4Å: Chain B: H.30, E.48, G.50, S.51, F.52, F.56, T.110, V.112 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:H.30, B:E.48, B:S.51, B:F.56, B:T.110, B:T.110 Water bridges: B:G.54, B:D.55, B:T.110 TRS.11: 7 residues within 4Å: Chain C: E.48, G.50, S.51, F.52, F.56, T.110, V.112 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:E.48, C:E.48, C:S.51, C:F.56, C:T.110 Water bridges: C:H.30, C:G.54, C:D.55, C:T.110 TRS.15: 7 residues within 4Å: Chain D: H.30, E.48, G.50, F.52, F.56, T.110, V.112 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:E.48, D:E.48, D:G.50, D:S.51, D:F.56 Water bridges: D:H.30, D:G.54, D:D.55, D:T.110

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: P.142, N.143, R.149, E.168, H.173, T.176 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.149, A:H.173 Water bridges: A:N.143, A:A.238 EDO.8: 4 residues within 4Å: Chain B: R.42, P.43, H.63, F.64 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain B: P.142, R.149, E.168, H.173, T.176 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.149, B:H.173 Water bridges: B:N.143, B:A.238, B:A.238 EDO.12: 5 residues within 4Å: Chain C: P.142, R.149, E.168, H.173, T.176 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.149, C:H.173 Water bridges: C:N.143, C:E.168, C:T.176, C:A.238 EDO.16: 5 residues within 4Å: Chain D: L.100, R.102, R.103, D.129, W.130 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:L.100 Water bridges: D:R.103, D:R.125, D:D.129 EDO.17: 3 residues within 4Å: Chain D: H.160, S.162, A.163 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.162 EDO.18: 5 residues within 4Å: Chain D: P.142, N.143, R.149, H.173, T.176 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:R.149, D:H.173 Water bridges: D:N.143, D:E.168, D:T.176, D:T.176, D:A.238

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 3 residues within 4Å: Chain B: H.115, I.116, D.117 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.117, B:D.117 NA.14: 2 residues within 4Å: Chain D: H.115, D.117 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.117, D:D.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (YP_049838.1) from Erwinia carotovora atroseptica SCRI1043 at 1.85 A resolution. To be published

Release Date

2007-04-03

Peptides

Hypothetical protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Hypothetical protein

Related Entries With Identical Sequence