SMTL ID : 2p7i.1 (1 other biounit)

CRYSTAL STRUCTURE OF a SAM dependent methyl-transferase type 12 family protein (ECA1738) FROM PECTOBACTERIUM ATROSEPTICUM SCRI1043 AT 1.74 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-tetramer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: A.132, E.133 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain C: A.132, E.133 Ligand excluded by PLIP

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 8 residues within 4Å: Chain A: H.30, E.48, G.50, S.51, F.52, T.110, H.111, V.112 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.30, A:T.110, A:T.110, A:H.111 Water bridges: A:E.48, A:G.54 TRS.5: 7 residues within 4Å: Chain B: E.48, G.50, S.51, F.56, T.110, H.111, V.112 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.51, B:F.56, B:T.110, B:T.110, B:H.111 Water bridges: B:G.54, B:G.54 TRS.7: 8 residues within 4Å: Chain C: H.30, E.48, G.50, S.51, F.52, T.110, H.111, V.112 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:H.30, C:E.48, C:T.110, C:H.111 Water bridges: C:E.48, C:G.54 TRS.10: 7 residues within 4Å: Chain D: E.48, G.50, S.51, F.56, T.110, H.111, V.112 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:E.48, D:S.51, D:F.56, D:T.110, D:H.111 Water bridges: D:G.54, D:D.55

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 4 residues within 4Å: Chain A: V.164, T.165, E.166, F.169 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.169 Water bridges: A:V.164 MPD.8: 4 residues within 4Å: Chain C: V.164, T.165, E.166, F.169 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.169 Water bridges: C:V.164

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain B: N.249, Q.250 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.250, B:Q.250 Water bridges: B:N.249 NA.9: 2 residues within 4Å: Chain D: N.249, Q.250 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.250, D:Q.250 Water bridges: D:N.249, D:N.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (YP_049838.1) from Erwinia carotovora atroseptica SCRI1043 at 1.74 A resolution. To be published

Release Date

2007-04-03

Peptides

Hypothetical protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Hypothetical protein

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