SMTL ID : 2pe7.1

Thaumatin from Thaumatococcus Danielli in complex with tris-dipicolinate Europium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x EU: EUROPIUM ION(Non-functional Binders)

EU.1: 3 residues within 4Å: Ligands: PDC.4, PDC.5, PDC.6 No protein-ligand interaction detected (PLIP)

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 4 residues within 4Å: Chain A: G.96, K.97, P.194, G.195 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.96, A:G.195, A:G.195 Water bridges: A:G.96, A:K.97, A:K.97, A:G.195 Salt bridges: A:K.97 TLA.3: 3 residues within 4Å: Chain A: R.29, E.35, S.36 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.29, A:R.29, A:S.36, A:S.36, A:S.36 Salt bridges: A:R.29

3 x PDC: PYRIDINE-2,6-DICARBOXYLIC ACID(Non-covalent)(Non-functional Binders)

PDC.4: 5 residues within 4Å: Chain A: R.82, P.83 Ligands: EU.1, PDC.5, PDC.6 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.82 Salt bridges: A:R.82, A:K.106 PDC.5: 3 residues within 4Å: Ligands: EU.1, PDC.4, PDC.6 No protein-ligand interaction detected (PLIP) PDC.6: 7 residues within 4Å: Chain A: D.70, F.80, G.81, R.82 Ligands: EU.1, PDC.4, PDC.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.80 Hydrogen bonds: A:F.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pompidor, G. et al., A dipicolinate lanthanide complex for solving protein structures using anomalous diffraction. Acta Crystallogr.,Sect.D (2010)

Release Date

2008-04-22

Peptides

Preprothaumatin I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Preprothaumatin I

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