- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.3: 16 residues within 4Å:- Chain A: I.38, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, D.250, E.252
- Ligands: MG.1, MG.2
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:N.44, A:E.115, A:L.117
- Water bridges: A:D.40, A:G.41, A:N.44
- Salt bridges: A:K.61, A:K.61
- pi-Stacking: A:F.240
ADP.7: 16 residues within 4Å:- Chain B: I.38, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, D.250, E.252
- Ligands: MG.4, MG.5
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:N.44, B:E.115, B:D.116, B:L.117
- Water bridges: B:G.237
- Salt bridges: B:K.61, B:K.61
- pi-Stacking: B:F.240
ADP.10: 16 residues within 4Å:- Chain C: I.38, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, D.250, E.252
- Ligands: MG.8, MG.9
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:N.44, C:E.115, C:L.117
- Water bridges: C:D.40, C:G.41, C:N.44
- Salt bridges: C:K.61, C:K.61
- pi-Stacking: C:F.240
ADP.14: 16 residues within 4Å:- Chain D: I.38, N.44, V.46, I.59, K.61, M.114, E.115, D.116, L.117, S.118, I.122, F.240, D.250, E.252
- Ligands: MG.11, MG.12
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:N.44, D:E.115, D:D.116, D:L.117
- Water bridges: D:G.237
- Salt bridges: D:K.61, D:K.61
- pi-Stacking: D:F.240
- 2 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
CPS.6: 10 residues within 4Å:- Chain A: E.380, D.386, E.389, L.390, L.393
- Chain D: K.377, E.380, L.390, L.393, L.394
13 PLIP interactions:6 interactions with chain D, 7 interactions with chain A- Hydrophobic interactions: D:L.390, D:L.393, D:L.394, A:E.380, A:D.386, A:E.389, A:L.390, A:L.393
- Hydrogen bonds: D:E.380, A:E.389
- Water bridges: D:R.365, D:R.365, A:E.380
CPS.13: 10 residues within 4Å:- Chain B: K.377, E.380, L.390, L.393, L.394
- Chain C: E.380, D.386, E.389, L.390, L.393
13 PLIP interactions:6 interactions with chain B, 7 interactions with chain C- Hydrophobic interactions: B:L.390, B:L.393, B:L.394, C:E.380, C:D.386, C:E.389, C:L.390, C:L.393
- Hydrogen bonds: B:E.380, C:E.389
- Water bridges: B:R.365, B:R.365, C:E.380
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ku, S.-Y. et al., Structures of 5-methylthioribose kinase reveal substrate specificity and unusual mode of nucleotide binding. J.Biol.Chem. (2007)
- Release Date
- 2007-05-22
- Peptides
- Methylthioribose kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ku, S.-Y. et al., Structures of 5-methylthioribose kinase reveal substrate specificity and unusual mode of nucleotide binding. J.Biol.Chem. (2007)
- Release Date
- 2007-05-22
- Peptides
- Methylthioribose kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B