SMTL ID : 2pwa.1

Crystal Structure of the complex of Proteinase K with Alanine Boronic acid at 0.83A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.83 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: P.175, V.177, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.175, A:V.177, A:D.200, A:D.200, H2O.1

9 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 1 residues within 4Å: Chain A: N.120 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.119, A:N.120 NO3.3: 4 residues within 4Å: Chain A: D.184, R.185, Y.186, R.188 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.185, A:R.188 Water bridges: A:R.185, A:R.188 NO3.4: 4 residues within 4Å: Chain A: Y.104, S.105, I.108, S.140 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.140, A:S.140 Water bridges: A:Y.104, A:S.105, A:S.105, A:S.105 NO3.5: 5 residues within 4Å: Chain A: Y.60, Y.61, K.94, D.97, D.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.94, A:D.98 Water bridges: A:Y.61, A:Y.61, A:R.64, A:D.98 NO3.6: 4 residues within 4Å: Chain A: K.118, G.126, V.127, G.152 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.127 NO3.7: 3 residues within 4Å: Chain A: A.246, S.247, R.250 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.250, A:R.250 Water bridges: A:R.250 NO3.8: 8 residues within 4Å: Chain A: L.96, S.101, G.102, Y.104, I.107, L.133, G.134, G.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.102, A:G.102, A:G.134 NO3.9: 3 residues within 4Å: Chain A: D.165, R.167, N.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.167 Water bridges: A:D.165, A:D.165 NO3.10: 2 residues within 4Å: Chain A: P.124, K.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.125, A:K.125 Water bridges: A:P.124, A:P.124

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 5 residues within 4Å: Chain A: M.55, V.56, K.57, T.58, S.63 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.56, A:T.58, A:S.63, A:S.63 Water bridges: A:M.55, A:S.63

2 x B2A: ALANINE BORONIC ACID(Non-covalent)

B2A.12: 9 residues within 4Å: Chain A: S.132, L.133, G.134, A.158, G.160, N.161, T.223, S.224 Ligands: B2A.13 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.158 Hydrogen bonds: A:G.134, A:N.161, A:T.223, A:S.224 Water bridges: A:S.132, A:S.224 B2A.13: 8 residues within 4Å: Chain A: H.69, N.161, I.220, S.221, G.222, S.224, M.225 Ligands: B2A.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.69, A:H.69, A:N.161, A:S.221, A:S.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jain, R. et al., Crystal structure of the complex of Proteinase K with Alanine Boronic Acid at 0.83A Resolution. To be Published

Release Date

2007-05-29

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proteinase K

Related Entries With Identical Sequence