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SMTL ID : 2pwb.1

Crystal structure of the complex of proteinase K with coumarin at 1.9 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1:	3 residues within 4Å: Chain A: P.175, V.177, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.175, A:V.177, A:D.200, A:D.200, H₂O.2
CA.2:	2 residues within 4Å: Chain A: T.16, D.260 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.16, A:D.260, H₂O.4, H₂O.8, H₂O.10

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.3:

5 residues within 4Å:

Chain A: Y.60, Y.61, K.94, D.97, D.98

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.94, A:D.98
Water bridges: A:Y.61, A:Y.61

1 x COU: COUMARIN(Non-covalent)

COU.4:

5 residues within 4Å:

Chain A: H.69, L.133, G.134, N.161, S.224

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:S.224
Salt bridges: A:H.69

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Singh, A.K. et al., Crystal structure of the complex of proteinase K with coumarin at 1.9A resolution. To be Published

Release Date

2007-05-22

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

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