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SMTL ID : 2pyz.1

Crystal structure of the complex of proteinase K with auramine at 1.8A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1:	3 residues within 4Å: Chain A: P.175, V.177, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:P.175, A:D.200, A:D.200, H₂O.1, H₂O.1
CA.2:	2 residues within 4Å: Chain A: T.16, D.260 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.260, H₂O.4, H₂O.4, H₂O.6, H₂O.8

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.3:

5 residues within 4Å:

Chain A: Y.60, Y.61, K.94, D.97, D.98

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.94, A:D.98
Water bridges: A:Y.61, A:Y.61

1 x AU4: 4,4'-(AMINOMETHYLENE)BIS(N,N-DIMETHYLANILINE)(Non-covalent)

AU4.4:

6 residues within 4Å:

Chain A: G.134, G.135, N.161, N.162, Y.169, S.224

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:S.224
Water bridges: A:H.69, A:H.69, A:S.132, A:S.224, A:S.224

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Singh, A.K. et al., Crystal structure of the complex of Proteinase K with auramine at 1.8A resolution. To be Published

Release Date

2007-07-03

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

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