SMTL ID : 2q25.1 (3 other biounits)

Flock House Virus Coat protein D75N mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-trimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain B: D.221, G.273 Chain C: D.161 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Metal complexes: B:D.221, B:G.273, C:D.161 CA.3: 3 residues within 4Å: Chain C: D.221, G.273 Chain D: D.161 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Metal complexes: D:D.161, C:D.221, C:G.273 CA.6: 3 residues within 4Å: Chain B: D.161 Chain D: D.221, G.273 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Metal complexes: D:D.221, D:G.273, B:D.161 CA.7: 6 residues within 4Å: Chain B: D.249, E.251 Chain C: D.249, E.251 Chain D: D.249, E.251 4 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B, 1 interactions with chain C Metal complexes: D:D.249, D:E.251, B:D.249, C:D.249

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain B: G.258, Q.260, T.261, P.264, A.265 Chain D: Q.201, F.202 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:Q.260, B:T.261, B:A.265, D:Q.201 SO4.4: 7 residues within 4Å: Chain B: Q.201, P.203 Chain C: G.258, Q.260, T.261, P.264, A.265 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.258, C:Q.260, C:T.261, C:A.265, B:Q.201, B:S.211 SO4.5: 3 residues within 4Å: Chain B: R.87 Chain C: R.87 Chain D: R.87 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain D Salt bridges: B:R.87, C:R.87, D:R.87 SO4.8: 7 residues within 4Å: Chain C: Q.201, F.202, P.203 Chain D: G.258, Q.260, T.261, A.265 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:G.258, D:Q.260, D:T.261, D:A.265, C:Q.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, J.E. et al., Structure Definition in the Auto Catalytic Mutation of Icosahedral Virus. To be Published

Release Date

2008-07-15

Peptides

Protein alpha: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

C
B

D
C

Protein alpha

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