SMTL ID : 2q25.2 (3 other biounits)

Flock House Virus Coat protein D75N mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-15-mer

Ligands

20 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain B: D.221, G.273 Chain C: D.161 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Metal complexes: C:D.161, B:D.221, B:G.273 CA.3: 3 residues within 4Å: Chain C: D.221, G.273 Chain D: D.161 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Metal complexes: C:D.221, C:G.273, D:D.161 CA.6: 3 residues within 4Å: Chain B: D.161 Chain D: D.221, G.273 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Metal complexes: D:D.221, D:G.273, B:D.161 CA.7: 6 residues within 4Å: Chain B: D.249, E.251 Chain C: D.249, E.251 Chain D: D.249, E.251 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D, 1 interactions with chain C Metal complexes: B:D.249, D:D.249, D:E.251, C:D.249 CA.9: 3 residues within 4Å: Chain F: D.221, G.273 Chain G: D.161 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain G Metal complexes: F:D.221, F:G.273, G:D.161 CA.11: 3 residues within 4Å: Chain G: D.221, G.273 Chain H: D.161 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain H Metal complexes: G:D.221, G:G.273, H:D.161 CA.14: 3 residues within 4Å: Chain F: D.161 Chain H: D.221, G.273 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain H Metal complexes: F:D.161, H:D.221, H:G.273 CA.15: 6 residues within 4Å: Chain F: D.249, E.251 Chain G: D.249, E.251 Chain H: D.249, E.251 4 PLIP interactions: 1 interactions with chain G, 1 interactions with chain F, 2 interactions with chain H Metal complexes: G:D.249, F:D.249, H:D.249, H:E.251 CA.17: 3 residues within 4Å: Chain J: D.221, G.273 Chain K: D.161 3 PLIP interactions: 1 interactions with chain K, 2 interactions with chain J Metal complexes: K:D.161, J:D.221, J:G.273 CA.19: 3 residues within 4Å: Chain K: D.221, G.273 Chain L: D.161 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain L Metal complexes: K:D.221, K:G.273, L:D.161 CA.22: 3 residues within 4Å: Chain J: D.161 Chain L: D.221, G.273 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain J Metal complexes: L:D.221, L:G.273, J:D.161 CA.23: 6 residues within 4Å: Chain J: D.249, E.251 Chain K: D.249, E.251 Chain L: D.249, E.251 4 PLIP interactions: 2 interactions with chain L, 1 interactions with chain J, 1 interactions with chain K Metal complexes: L:D.249, L:E.251, J:D.249, K:D.249 CA.25: 3 residues within 4Å: Chain N: D.221, G.273 Chain O: D.161 3 PLIP interactions: 1 interactions with chain O, 2 interactions with chain N Metal complexes: O:D.161, N:D.221, N:G.273 CA.27: 3 residues within 4Å: Chain O: D.221, G.273 Chain P: D.161 3 PLIP interactions: 2 interactions with chain O, 1 interactions with chain P Metal complexes: O:D.221, O:G.273, P:D.161 CA.30: 3 residues within 4Å: Chain N: D.161 Chain P: D.221, G.273 3 PLIP interactions: 1 interactions with chain N, 2 interactions with chain P Metal complexes: N:D.161, P:D.221, P:G.273 CA.31: 6 residues within 4Å: Chain N: D.249, E.251 Chain O: D.249, E.251 Chain P: D.249, E.251 4 PLIP interactions: 2 interactions with chain P, 1 interactions with chain O, 1 interactions with chain N Metal complexes: P:D.249, P:E.251, O:D.249, N:D.249 CA.33: 3 residues within 4Å: Chain R: D.221, G.273 Chain S: D.161 3 PLIP interactions: 2 interactions with chain R, 1 interactions with chain S Metal complexes: R:D.221, R:G.273, S:D.161 CA.35: 3 residues within 4Å: Chain S: D.221, G.273 Chain T: D.161 3 PLIP interactions: 1 interactions with chain T, 2 interactions with chain S Metal complexes: T:D.161, S:D.221, S:G.273 CA.38: 3 residues within 4Å: Chain R: D.161 Chain T: D.221, G.273 3 PLIP interactions: 1 interactions with chain R, 2 interactions with chain T Metal complexes: R:D.161, T:D.221, T:G.273 CA.39: 6 residues within 4Å: Chain R: D.249, E.251 Chain S: D.249, E.251 Chain T: D.249, E.251 4 PLIP interactions: 1 interactions with chain R, 2 interactions with chain T, 1 interactions with chain S Metal complexes: R:D.249, T:D.249, T:E.251, S:D.249

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain B: G.258, Q.260, T.261, P.264, A.265 Chain D: Q.201, F.202 Ligand excluded by PLIP SO4.4: 7 residues within 4Å: Chain B: Q.201, P.203 Chain C: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain B: R.87 Chain C: R.87 Chain D: R.87 Ligand excluded by PLIP SO4.8: 7 residues within 4Å: Chain C: Q.201, F.202, P.203 Chain D: G.258, Q.260, T.261, A.265 Ligand excluded by PLIP SO4.10: 7 residues within 4Å: Chain F: G.258, Q.260, T.261, P.264, A.265 Chain H: Q.201, F.202 Ligand excluded by PLIP SO4.12: 7 residues within 4Å: Chain F: Q.201, P.203 Chain G: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain F: R.87 Chain G: R.87 Chain H: R.87 Ligand excluded by PLIP SO4.16: 7 residues within 4Å: Chain G: Q.201, F.202, P.203 Chain H: G.258, Q.260, T.261, A.265 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain J: G.258, Q.260, T.261, P.264, A.265 Chain L: Q.201, F.202 Ligand excluded by PLIP SO4.20: 7 residues within 4Å: Chain J: Q.201, P.203 Chain K: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain J: R.87 Chain K: R.87 Chain L: R.87 Ligand excluded by PLIP SO4.24: 7 residues within 4Å: Chain K: Q.201, F.202, P.203 Chain L: G.258, Q.260, T.261, A.265 Ligand excluded by PLIP SO4.26: 7 residues within 4Å: Chain N: G.258, Q.260, T.261, P.264, A.265 Chain P: Q.201, F.202 Ligand excluded by PLIP SO4.28: 7 residues within 4Å: Chain N: Q.201, P.203 Chain O: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain N: R.87 Chain O: R.87 Chain P: R.87 Ligand excluded by PLIP SO4.32: 7 residues within 4Å: Chain O: Q.201, F.202, P.203 Chain P: G.258, Q.260, T.261, A.265 Ligand excluded by PLIP SO4.34: 7 residues within 4Å: Chain R: G.258, Q.260, T.261, P.264, A.265 Chain T: Q.201, F.202 Ligand excluded by PLIP SO4.36: 7 residues within 4Å: Chain R: Q.201, P.203 Chain S: G.258, Q.260, T.261, P.264, A.265 Ligand excluded by PLIP SO4.37: 3 residues within 4Å: Chain R: R.87 Chain S: R.87 Chain T: R.87 Ligand excluded by PLIP SO4.40: 7 residues within 4Å: Chain S: Q.201, F.202, P.203 Chain T: G.258, Q.260, T.261, A.265 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, J.E. et al., Structure Definition in the Auto Catalytic Mutation of Icosahedral Virus. To be Published

Release Date

2008-07-15

Peptides

Protein alpha: BCDFGHJKLNOPRST

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

C
B

D
C

F
A

G
B

H
C

J
A

K
B

L
C

N
A

O
B

P
C

R
A

S
B

T
C

Protein alpha

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