- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- homo-18-mer
- Ligands
- 24 x CA: CALCIUM ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 9 residues within 4Å:- Chain A: S.211, S.212, L.213
- Chain B: S.211, S.212, L.213
- Chain C: S.211, S.212, L.213
4 PLIP interactions:1 interactions with chain C, 2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: C:L.213, A:L.213, A:L.213, B:L.213
SO4.12: 9 residues within 4Å:- Chain E: S.211, S.212, L.213
- Chain F: S.211, S.212, L.213
- Chain G: S.211, S.212, L.213
4 PLIP interactions:1 interactions with chain G, 2 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: G:L.213, E:L.213, E:L.213, F:L.213
SO4.21: 9 residues within 4Å:- Chain I: S.211, S.212, L.213
- Chain J: S.211, S.212, L.213
- Chain K: S.211, S.212, L.213
4 PLIP interactions:2 interactions with chain I, 1 interactions with chain J, 1 interactions with chain K- Hydrogen bonds: I:L.213, I:L.213, J:L.213, K:L.213
SO4.30: 9 residues within 4Å:- Chain M: S.211, S.212, L.213
- Chain N: S.211, S.212, L.213
- Chain O: S.211, S.212, L.213
4 PLIP interactions:2 interactions with chain M, 1 interactions with chain N, 1 interactions with chain O- Hydrogen bonds: M:L.213, M:L.213, N:L.213, O:L.213
SO4.39: 9 residues within 4Å:- Chain Q: S.211, S.212, L.213
- Chain R: S.211, S.212, L.213
- Chain S: S.211, S.212, L.213
4 PLIP interactions:1 interactions with chain R, 1 interactions with chain S, 2 interactions with chain Q- Hydrogen bonds: R:L.213, S:L.213, Q:L.213, Q:L.213
SO4.48: 9 residues within 4Å:- Chain U: S.211, S.212, L.213
- Chain V: S.211, S.212, L.213
- Chain W: S.211, S.212, L.213
4 PLIP interactions:1 interactions with chain V, 1 interactions with chain W, 2 interactions with chain U- Hydrogen bonds: V:L.213, W:L.213, U:L.213, U:L.213
- 18 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.4: 11 residues within 4Å:- Chain A: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain C: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.7: 11 residues within 4Å:- Chain A: Q.201, F.202, P.203
- Chain B: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.9: 11 residues within 4Å:- Chain B: Q.201, F.202, P.203
- Chain C: S.156, G.258, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.13: 11 residues within 4Å:- Chain E: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain G: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.16: 11 residues within 4Å:- Chain E: Q.201, F.202, P.203
- Chain F: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.18: 11 residues within 4Å:- Chain F: Q.201, F.202, P.203
- Chain G: S.156, G.258, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.22: 11 residues within 4Å:- Chain I: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain K: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.25: 11 residues within 4Å:- Chain I: Q.201, F.202, P.203
- Chain J: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.27: 11 residues within 4Å:- Chain J: Q.201, F.202, P.203
- Chain K: S.156, G.258, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.31: 11 residues within 4Å:- Chain M: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain O: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.34: 11 residues within 4Å:- Chain M: Q.201, F.202, P.203
- Chain N: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.36: 11 residues within 4Å:- Chain N: Q.201, F.202, P.203
- Chain O: S.156, G.258, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.40: 11 residues within 4Å:- Chain Q: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain S: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.43: 11 residues within 4Å:- Chain Q: Q.201, F.202, P.203
- Chain R: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.45: 11 residues within 4Å:- Chain R: Q.201, F.202, P.203
- Chain S: S.156, G.258, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.49: 11 residues within 4Å:- Chain U: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
- Chain W: Q.201, F.202, P.203
Ligand excluded by PLIPEPE.52: 11 residues within 4Å:- Chain U: Q.201, F.202, P.203
- Chain V: G.258, I.259, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIPEPE.54: 11 residues within 4Å:- Chain V: Q.201, F.202, P.203
- Chain W: S.156, G.258, Q.260, T.261, P.264, A.265, A.282, E.283
Ligand excluded by PLIP- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 2 residues within 4Å:- Chain B: S.102
- Chain G: R.300
Ligand excluded by PLIPCL.15: 1 residues within 4Å:- Chain F: S.102
Ligand excluded by PLIPCL.24: 1 residues within 4Å:- Chain J: S.102
Ligand excluded by PLIPCL.33: 2 residues within 4Å:- Chain K: R.300
- Chain N: S.102
Ligand excluded by PLIPCL.42: 2 residues within 4Å:- Chain R: S.102
- Chain W: R.300
Ligand excluded by PLIPCL.51: 1 residues within 4Å:- Chain V: S.102
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Speir, J.A. et al., Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides. to be published (2012)
- Release Date
- 2012-08-01
- Peptides
- Capsid protein alpha: ABCEFGIJKMNOQRSUVW
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CE
AF
BG
CI
AJ
BK
CM
AN
BO
CQ
AR
BS
CU
AV
BW
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- homo-18-mer
- Ligands
- 24 x CA: CALCIUM ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 18 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Speir, J.A. et al., Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides. to be published (2012)
- Release Date
- 2012-08-01
- Peptides
- Capsid protein alpha: ABCEFGIJKMNOQRSUVW
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CE
AF
BG
CI
AJ
BK
CM
AN
BO
CQ
AR
BS
CU
AV
BW
C