SMTL ID : 2q3t.1 (1 other biounit)

Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At3g22680

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.59, S.60, L.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.60 SO4.2: 4 residues within 4Å: Chain A: S.132, H.133 Chain B: T.100, D.101 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:H.133, B:T.100, B:D.101 Water bridges: A:D.47, A:H.133, A:L.134, B:T.100, B:S.102 Salt bridges: A:K.50, A:H.133 SO4.3: 3 residues within 4Å: Chain A: P.55, T.56, N.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.56, A:N.57, A:N.57 SO4.9: 3 residues within 4Å: Chain B: G.59, S.60, L.77 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.60 SO4.10: 4 residues within 4Å: Chain A: T.100, D.101 Chain B: S.132, H.133 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:D.101, B:H.133 Water bridges: A:T.100, A:S.102, B:H.133, B:H.133, B:L.134 Salt bridges: B:K.50, B:H.133 SO4.11: 3 residues within 4Å: Chain B: P.55, T.56, N.57 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.56, B:N.57, B:N.57

2 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.4: 6 residues within 4Å: Chain A: R.41, M.44, Y.45, Y.48, I.153 Ligands: EDO.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:M.44, A:Y.45, A:Y.48, A:Y.48, A:I.153 Water bridges: A:E.156 CPS.12: 6 residues within 4Å: Chain B: R.41, M.44, Y.45, Y.48, I.153 Ligands: EDO.13 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:M.44, B:Y.45, B:Y.48, B:Y.48, B:I.153 Water bridges: B:E.156

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: Y.45, Y.48, P.81, I.150, D.151, P.152 Ligands: CPS.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.151 Water bridges: A:Y.45 EDO.6: 7 residues within 4Å: Chain A: L.85, H.127, H.135 Chain B: L.89, R.92, W.93, S.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.135 EDO.7: 3 residues within 4Å: Chain A: I.72, S.73, Q.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.73, A:Q.76 EDO.8: 7 residues within 4Å: Chain A: K.75, N.87, S.148, F.149, I.150, D.151, P.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.150 EDO.13: 7 residues within 4Å: Chain B: Y.45, Y.48, P.81, I.150, D.151, P.152 Ligands: CPS.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.151 Water bridges: B:Y.45 EDO.14: 7 residues within 4Å: Chain A: L.89, R.92, W.93, S.96 Chain B: L.85, H.127, H.135 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.135 EDO.15: 3 residues within 4Å: Chain B: I.72, S.73, Q.76 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.73, B:Q.76 EDO.16: 7 residues within 4Å: Chain B: K.75, N.87, S.148, F.149, I.150, D.151, P.152 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levin, E.J. et al., Ensemble refinement of protein crystal structures: validation and application. Structure (2007)

Release Date

2007-06-19

Peptides

Protein At3g22680: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein At3g22680

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