SMTL ID : 2q6i.1 (1 other biounit)

salL with ClDA and LMet

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

3 x 5CD: 5'-CHLORO-5'-DEOXYADENOSINE(Non-covalent)

5CD.1: 18 residues within 4Å: Chain A: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 Chain C: F.186, N.188, F.228, L.250, N.251, Q.252 Ligands: MET.2 9 PLIP interactions: 6 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:N.188, C:L.250, C:Q.252, A:D.11, A:D.11, A:Y.72 Water bridges: C:L.250 pi-Stacking: C:F.228, C:F.228 5CD.6: 18 residues within 4Å: Chain A: F.186, N.188, F.228, L.250, N.251, Q.252 Chain B: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 Ligands: MET.7 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:D.11, B:D.11, B:Y.72, A:N.188, A:L.250, A:Q.252 Water bridges: A:L.250 pi-Stacking: A:F.228, A:F.228 5CD.11: 18 residues within 4Å: Chain B: F.186, N.188, F.228, L.250, N.251, Q.252 Chain C: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 Ligands: MET.12 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:N.188, B:L.250, B:Q.252, C:D.11, C:D.11, C:Y.72 Water bridges: B:L.250 pi-Stacking: B:F.228, B:F.228

3 x MET: METHIONINE(Non-covalent)

MET.2: 9 residues within 4Å: Chain A: A.18, T.128, W.129 Chain C: D.183, N.188, W.190, F.228, S.242 Ligands: 5CD.1 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.242, C:S.242 MET.7: 9 residues within 4Å: Chain A: D.183, N.188, W.190, F.228, S.242 Chain B: A.18, T.128, W.129 Ligands: 5CD.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.242, A:S.242 MET.12: 9 residues within 4Å: Chain B: D.183, N.188, W.190, F.228, S.242 Chain C: A.18, T.128, W.129 Ligands: 5CD.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.242, B:S.242

9 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: P.62, A.63, H.64 Chain B: G.28 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.63, A:H.64, A:H.64, B:G.28 PEG.4: 8 residues within 4Å: Chain A: M.1, H.3, R.85, G.89, L.91, L.142, G.145, T.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.145 PEG.5: 3 residues within 4Å: Chain A: H.59, K.88, A.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.59, A:A.106 PEG.8: 4 residues within 4Å: Chain B: P.62, A.63, H.64 Chain C: G.28 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:G.28, B:A.63, B:H.64, B:H.64 PEG.9: 8 residues within 4Å: Chain B: M.1, H.3, R.85, G.89, L.91, L.142, G.145, T.146 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.145 PEG.10: 3 residues within 4Å: Chain B: H.59, K.88, A.106 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.59, B:A.106 PEG.13: 4 residues within 4Å: Chain A: G.28 Chain C: P.62, A.63, H.64 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:A.63, C:H.64, C:H.64, A:G.28 PEG.14: 8 residues within 4Å: Chain C: M.1, H.3, R.85, G.89, L.91, L.142, G.145, T.146 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.145 PEG.15: 3 residues within 4Å: Chain C: H.59, K.88, A.106 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.59, C:A.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eustaquio, A.S. et al., Discovery and characterization of a marine bacterial SAM-dependent chlorinase. Nat.Chem.Biol. (2008)

Release Date

2007-12-11

Peptides

Hypothetical protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Hypothetical protein

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