SMTL ID : 2q6k.1 (1 other biounit)

SalL with adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-trimer

Ligands

3 x ADN: ADENOSINE(Non-covalent)

ADN.1: 18 residues within 4Å: Chain A: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 Chain C: F.186, N.188, F.228, L.250, N.251, Q.252, S.253 12 PLIP interactions: 6 interactions with chain C, 6 interactions with chain A Hydrogen bonds: C:N.188, C:L.250, C:Q.252, A:D.11, A:Y.70, A:Y.72, A:T.75, A:Y.130, A:G.131 Water bridges: C:L.250 pi-Stacking: C:F.228, C:F.228 ADN.4: 18 residues within 4Å: Chain A: F.186, N.188, F.228, L.250, N.251, Q.252, S.253 Chain B: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 12 PLIP interactions: 6 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:N.188, A:L.250, A:Q.252, B:D.11, B:Y.70, B:Y.72, B:T.75, B:Y.130, B:G.131 Water bridges: A:L.250 pi-Stacking: A:F.228, A:F.228 ADN.7: 18 residues within 4Å: Chain B: F.186, N.188, F.228, L.250, N.251, Q.252, S.253 Chain C: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 12 PLIP interactions: 6 interactions with chain B, 6 interactions with chain C Hydrogen bonds: B:N.188, B:L.250, B:Q.252, C:D.11, C:Y.70, C:Y.72, C:T.75, C:Y.130, C:G.131 Water bridges: B:L.250 pi-Stacking: B:F.228, B:F.228

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: Y.27, P.31 Chain C: N.4, L.5, H.64 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Water bridges: C:N.4, C:T.34 Hydrogen bonds: A:Y.27 PEG.3: 10 residues within 4Å: Chain A: D.56, R.181, D.183, W.190, S.242 Chain B: D.16, E.17, A.18, L.21, W.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.56, A:D.183, A:S.242 PEG.5: 5 residues within 4Å: Chain A: N.4, L.5, H.64 Chain B: Y.27, P.31 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:N.4, A:T.34 Hydrogen bonds: B:Y.27 PEG.6: 10 residues within 4Å: Chain B: D.56, R.181, D.183, W.190, S.242 Chain C: D.16, E.17, A.18, L.21, W.129 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.56, B:D.183, B:S.242 PEG.8: 5 residues within 4Å: Chain B: N.4, L.5, H.64 Chain C: Y.27, P.31 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:Y.27 Water bridges: B:N.4, B:T.34 PEG.9: 10 residues within 4Å: Chain A: D.16, E.17, A.18, L.21, W.129 Chain C: D.56, R.181, D.183, W.190, S.242 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.56, C:D.183, C:S.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eustaquio, A.S. et al., Discovery and characterization of a marine bacterial SAM-dependent chlorinase. Nat.Chem.Biol. (2008)

Release Date

2007-12-11

Peptides

chlorinase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

chlorinase

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