SMTL ID : 2q6k.2 (1 other biounit)

SalL with adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-hexamer

Ligands

6 x ADN: ADENOSINE(Non-covalent)

ADN.1: 18 residues within 4Å: Chain A: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 Chain C: F.186, N.188, F.228, L.250, N.251, Q.252, S.253 12 PLIP interactions: 6 interactions with chain A, 6 interactions with chain C Hydrogen bonds: A:D.11, A:Y.70, A:Y.72, A:T.75, A:Y.130, A:G.131, C:N.188, C:L.250, C:Q.252 Water bridges: C:L.250 pi-Stacking: C:F.228, C:F.228 ADN.4: 18 residues within 4Å: Chain A: F.186, N.188, F.228, L.250, N.251, Q.252, S.253 Chain B: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 12 PLIP interactions: 6 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:D.11, B:Y.70, B:Y.72, B:T.75, B:Y.130, B:G.131, A:N.188, A:L.250, A:Q.252 Water bridges: A:L.250 pi-Stacking: A:F.228, A:F.228 ADN.7: 18 residues within 4Å: Chain B: F.186, N.188, F.228, L.250, N.251, Q.252, S.253 Chain C: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 12 PLIP interactions: 6 interactions with chain C, 6 interactions with chain B Hydrogen bonds: C:D.11, C:Y.70, C:Y.72, C:T.75, C:Y.130, C:G.131, B:N.188, B:L.250, B:Q.252 Water bridges: B:L.250 pi-Stacking: B:F.228, B:F.228 ADN.10: 18 residues within 4Å: Chain D: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 Chain F: F.186, N.188, F.228, L.250, N.251, Q.252, S.253 11 PLIP interactions: 6 interactions with chain F, 5 interactions with chain D Hydrogen bonds: F:N.188, F:L.250, F:Q.252, D:D.11, D:Y.70, D:Y.72, D:Y.130, D:G.131 Water bridges: F:L.250 pi-Stacking: F:F.228, F:F.228 ADN.13: 18 residues within 4Å: Chain D: F.186, N.188, F.228, L.250, N.251, Q.252, S.253 Chain E: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 11 PLIP interactions: 5 interactions with chain E, 6 interactions with chain D Hydrogen bonds: E:D.11, E:Y.70, E:Y.72, E:Y.130, E:G.131, D:N.188, D:L.250, D:Q.252 Water bridges: D:L.250 pi-Stacking: D:F.228, D:F.228 ADN.16: 18 residues within 4Å: Chain E: F.186, N.188, F.228, L.250, N.251, Q.252, S.253 Chain F: D.11, F.45, Y.70, V.71, Y.72, P.73, T.75, T.128, W.129, Y.130, G.131 11 PLIP interactions: 5 interactions with chain F, 6 interactions with chain E Hydrogen bonds: F:D.11, F:Y.70, F:Y.72, F:Y.130, F:G.131, E:N.188, E:L.250, E:Q.252 Water bridges: E:L.250 pi-Stacking: E:F.228, E:F.228

12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 9 residues within 4Å: Chain A: Y.27, P.31 Chain C: N.4, L.5, H.64 Chain F: Q.2, N.4, A.32 Ligands: PEG.11 4 PLIP interactions: 1 interactions with chain F, 2 interactions with chain C, 1 interactions with chain A Water bridges: F:N.4, C:N.4, C:T.34 Hydrogen bonds: A:Y.27 PEG.3: 10 residues within 4Å: Chain A: D.56, R.181, D.183, W.190, S.242 Chain B: D.16, E.17, A.18, L.21, W.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.56, A:D.183, A:S.242 PEG.5: 9 residues within 4Å: Chain A: N.4, L.5, H.64 Chain B: Y.27, P.31 Chain E: Q.2, N.4, A.32 Ligands: PEG.17 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain E, 1 interactions with chain B Water bridges: A:N.4, A:T.34, E:N.4 Hydrogen bonds: B:Y.27 PEG.6: 10 residues within 4Å: Chain B: D.56, R.181, D.183, W.190, S.242 Chain C: D.16, E.17, A.18, L.21, W.129 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.56, B:D.183, B:S.242 PEG.8: 9 residues within 4Å: Chain B: N.4, L.5, H.64 Chain C: Y.27, P.31 Chain D: Q.2, N.4, A.32 Ligands: PEG.14 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D, 1 interactions with chain C Water bridges: B:N.4, B:T.34, D:N.4 Hydrogen bonds: C:Y.27 PEG.9: 10 residues within 4Å: Chain A: D.16, E.17, A.18, L.21, W.129 Chain C: D.56, R.181, D.183, W.190, S.242 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.56, C:D.183, C:S.242 PEG.11: 9 residues within 4Å: Chain C: Q.2, N.4, A.32 Chain D: Y.27, P.31 Chain F: N.4, L.5, H.64 Ligands: PEG.2 4 PLIP interactions: 2 interactions with chain F, 1 interactions with chain C, 1 interactions with chain D Water bridges: F:N.4, F:T.34, C:N.4 Hydrogen bonds: D:Y.27 PEG.12: 10 residues within 4Å: Chain D: D.56, R.181, D.183, W.190, S.242 Chain E: D.16, E.17, A.18, L.21, W.129 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.56, D:D.56, D:D.183, D:S.242 PEG.14: 9 residues within 4Å: Chain B: Q.2, N.4, A.32 Chain D: N.4, L.5, H.64 Chain E: Y.27, P.31 Ligands: PEG.8 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D, 1 interactions with chain E Water bridges: B:N.4, D:N.4, D:T.34 Hydrogen bonds: E:Y.27 PEG.15: 10 residues within 4Å: Chain E: D.56, R.181, D.183, W.190, S.242 Chain F: D.16, E.17, A.18, L.21, W.129 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:D.56, E:D.56, E:D.183, E:S.242 PEG.17: 9 residues within 4Å: Chain A: Q.2, N.4, A.32 Chain E: N.4, L.5, H.64 Chain F: Y.27, P.31 Ligands: PEG.5 4 PLIP interactions: 2 interactions with chain E, 1 interactions with chain A, 1 interactions with chain F Water bridges: E:N.4, E:T.34, A:N.4 Hydrogen bonds: F:Y.27 PEG.18: 10 residues within 4Å: Chain D: D.16, E.17, A.18, L.21, W.129 Chain F: D.56, R.181, D.183, W.190, S.242 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:D.56, F:D.56, F:D.183, F:S.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eustaquio, A.S. et al., Discovery and characterization of a marine bacterial SAM-dependent chlorinase. Nat.Chem.Biol. (2008)

Release Date

2007-12-11

Peptides

chlorinase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

chlorinase

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