- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PSZ: 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID(Covalent)
PSZ.4: 21 residues within 4Å:- Chain A: G.34, G.102, G.103, T.104, L.107, W.130, H.133, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254, F.348, R.374
- Chain B: Y.65
- Ligands: PMP.5, GOL.16
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:A.213
- Hydrogen bonds: A:G.103, A:T.104, A:T.104, A:T.104, A:N.183, A:Y.214, A:S.243, A:S.245
- Water bridges: A:G.32, A:R.254, A:R.254, A:R.374
- Salt bridges: A:R.254, A:R.374
- pi-Stacking: A:W.130, A:W.130
PSZ.22: 21 residues within 4Å:- Chain A: Y.65
- Chain B: G.34, G.102, G.103, T.104, L.107, W.130, H.133, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254, F.348, R.374
- Ligands: PMP.23, GOL.34
16 PLIP interactions:15 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:A.213
- Hydrogen bonds: B:G.103, B:T.104, B:T.104, B:N.183, B:S.243, B:S.245, A:Y.65
- Water bridges: B:G.32, B:R.254, B:R.254, B:R.374
- Salt bridges: B:R.254, B:R.374
- pi-Stacking: B:W.130, B:W.130
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PMP.5: 15 residues within 4Å:- Chain A: G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Chain B: Y.65
- Ligands: PSZ.4
15 PLIP interactions:12 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:A.213
- Hydrogen bonds: A:G.103, A:T.104, A:T.104, A:N.183, A:Y.214, A:S.243, A:S.245, B:Y.65, B:Y.65
- Water bridges: A:R.254, B:S.284
- Salt bridges: A:R.254
- pi-Stacking: A:W.130, A:W.130
PMP.23: 15 residues within 4Å:- Chain A: Y.65
- Chain B: G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Ligands: PSZ.22
13 PLIP interactions:10 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:A.213
- Hydrogen bonds: B:G.103, B:T.104, B:N.183, B:S.243, B:S.245, A:Y.65, A:Y.65
- Water bridges: B:R.254, A:S.284
- Salt bridges: B:R.254
- pi-Stacking: B:W.130, B:W.130
- 26 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 9 residues within 4Å:- Chain A: G.216, G.220, L.221, E.308, L.311, T.312, R.315
- Ligands: SO4.3, GOL.13
Ligand excluded by PLIPGOL.7: 8 residues within 4Å:- Chain A: Y.36, T.43, P.44, L.46, K.246, G.249, Y.251, M.314
Ligand excluded by PLIPGOL.8: 7 residues within 4Å:- Chain A: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
Ligand excluded by PLIPGOL.9: 4 residues within 4Å:- Chain A: A.218, R.315, Q.316, Q.319
Ligand excluded by PLIPGOL.10: 3 residues within 4Å:- Chain A: Y.150, F.350, S.372
Ligand excluded by PLIPGOL.11: 4 residues within 4Å:- Chain A: Y.55, T.296, N.300, L.303
Ligand excluded by PLIPGOL.12: 5 residues within 4Å:- Chain A: P.189, T.190, L.191, R.219, N.345
Ligand excluded by PLIPGOL.13: 6 residues within 4Å:- Chain A: G.220, L.221, E.222, E.223
- Ligands: SO4.3, GOL.6
Ligand excluded by PLIPGOL.14: 6 residues within 4Å:- Chain A: T.40, G.41, G.379, T.381, D.383, N.384
Ligand excluded by PLIPGOL.15: 4 residues within 4Å:- Chain A: D.301, R.304, A.305, E.308
Ligand excluded by PLIPGOL.16: 6 residues within 4Å:- Chain A: K.246
- Chain B: Y.65, R.280, S.284, N.285
- Ligands: PSZ.4
Ligand excluded by PLIPGOL.17: 8 residues within 4Å:- Chain A: N.30, L.31, G.32, I.33, G.34, V.35, K.37, N.376
Ligand excluded by PLIPGOL.18: 4 residues within 4Å:- Chain A: G.67, I.68, D.69, K.276
Ligand excluded by PLIPGOL.24: 9 residues within 4Å:- Chain B: G.216, G.220, L.221, E.308, L.311, T.312, R.315
- Ligands: SO4.21, GOL.31
Ligand excluded by PLIPGOL.25: 8 residues within 4Å:- Chain B: Y.36, T.43, P.44, L.46, K.246, G.249, Y.251, M.314
Ligand excluded by PLIPGOL.26: 7 residues within 4Å:- Chain B: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
Ligand excluded by PLIPGOL.27: 4 residues within 4Å:- Chain B: A.218, R.315, Q.316, Q.319
Ligand excluded by PLIPGOL.28: 3 residues within 4Å:- Chain B: Y.150, F.350, S.372
Ligand excluded by PLIPGOL.29: 4 residues within 4Å:- Chain B: Y.55, T.296, N.300, L.303
Ligand excluded by PLIPGOL.30: 5 residues within 4Å:- Chain B: P.189, T.190, L.191, R.219, N.345
Ligand excluded by PLIPGOL.31: 6 residues within 4Å:- Chain B: G.220, L.221, E.222, E.223
- Ligands: SO4.21, GOL.24
Ligand excluded by PLIPGOL.32: 6 residues within 4Å:- Chain B: T.40, G.41, G.379, T.381, D.383, N.384
Ligand excluded by PLIPGOL.33: 4 residues within 4Å:- Chain B: D.301, R.304, A.305, E.308
Ligand excluded by PLIPGOL.34: 6 residues within 4Å:- Chain A: Y.65, R.280, S.284, N.285
- Chain B: K.246
- Ligands: PSZ.22
Ligand excluded by PLIPGOL.35: 8 residues within 4Å:- Chain B: N.30, L.31, G.32, I.33, G.34, V.35, K.37, N.376
Ligand excluded by PLIPGOL.36: 4 residues within 4Å:- Chain B: G.67, I.68, D.69, K.276
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals "a tale of two mechanisms". Biochemistry (2007)
- Release Date
- 2007-12-04
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PSZ: 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID(Covalent)
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 26 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals "a tale of two mechanisms". Biochemistry (2007)
- Release Date
- 2007-12-04
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A