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SMTL ID : 5vwq.2
(1 other biounit)
E.coli Aspartate aminotransferase-(1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
PMP
:
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
(Non-covalent)
PMP.1:
14 residues within 4Å:
Chain A:
G.102
,
G.103
,
T.104
,
W.130
,
H.178
,
N.183
,
D.211
,
A.213
,
Y.214
,
S.243
,
S.245
,
K.246
,
R.254
Chain B:
Y.65
14
PLIP interactions
:
12 interactions with chain A
,
2 interactions with chain B
Hydrogen bonds:
A:G.103
,
A:T.104
,
A:N.183
,
A:Y.214
,
A:S.243
,
A:S.245
,
A:K.246
,
A:K.246
,
B:Y.65
Water bridges:
A:R.254
,
B:Y.65
Salt bridges:
A:R.254
pi-Stacking:
A:W.130
,
A:W.130
PMP.2:
14 residues within 4Å:
Chain A:
Y.65
Chain B:
G.102
,
G.103
,
T.104
,
W.130
,
H.178
,
N.183
,
D.211
,
A.213
,
Y.214
,
S.243
,
S.245
,
K.246
,
R.254
14
PLIP interactions
:
12 interactions with chain B
,
2 interactions with chain A
Hydrogen bonds:
B:G.103
,
B:T.104
,
B:N.183
,
B:Y.214
,
B:S.243
,
B:S.245
,
B:K.246
,
B:K.246
,
A:Y.65
Water bridges:
B:R.254
,
A:S.284
Salt bridges:
B:R.254
pi-Stacking:
B:W.130
,
B:W.130
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Mascarenhas, R. et al., Selective Targeting by a Mechanism-Based Inactivator against Pyridoxal 5'-Phosphate-Dependent Enzymes: Mechanisms of Inactivation and Alternative Turnover. Biochemistry (2017)
Release Date
2017-08-30
Peptides
Aspartate aminotransferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
G
B
J
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Aspartate aminotransferase
Toggle Identical (AB)
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