- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PJ7: 4-aminofuran-2-carboxylic acid(Covalent)
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PMP.2: 16 residues within 4Å:- Chain A: G.102, G.103, T.104, W.130, H.133, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Chain B: Y.65
- Ligands: PJ7.1
15 PLIP interactions:12 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:G.103, A:T.104, A:T.104, A:N.183, A:Y.214, A:S.243, A:S.245, B:Y.65, B:Y.65
- Water bridges: A:F.212, A:R.254, B:Y.65
- Salt bridges: A:R.254
- pi-Stacking: A:W.130, A:W.130
PMP.19: 16 residues within 4Å:- Chain A: Y.65
- Chain B: G.102, G.103, T.104, W.130, H.133, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Ligands: PJ7.18
13 PLIP interactions:10 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:G.103, B:T.104, B:N.183, B:S.243, B:S.245, A:Y.65, A:Y.65
- Water bridges: B:F.212, B:R.254, A:Y.65
- Salt bridges: B:R.254
- pi-Stacking: B:W.130, B:W.130
- 22 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 5 residues within 4Å:- Chain A: I.68, A.277, R.280
- Chain B: P.9, D.11
Ligand excluded by PLIPGOL.4: 5 residues within 4Å:- Chain A: A.218, R.315, Q.316, Q.319
- Ligands: GOL.5
Ligand excluded by PLIPGOL.5: 3 residues within 4Å:- Chain A: R.315, Q.316
- Ligands: GOL.4
Ligand excluded by PLIPGOL.6: 8 residues within 4Å:- Chain A: G.216, G.220, L.221, E.308, L.311, T.312, R.315
- Ligands: GOL.11
Ligand excluded by PLIPGOL.7: 7 residues within 4Å:- Chain A: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
Ligand excluded by PLIPGOL.8: 3 residues within 4Å:- Chain A: Y.150, L.353, S.372
Ligand excluded by PLIPGOL.9: 3 residues within 4Å:- Chain A: Y.55, N.300, L.303
Ligand excluded by PLIPGOL.10: 5 residues within 4Å:- Chain A: P.189, T.190, L.191, R.219, N.345
Ligand excluded by PLIPGOL.11: 4 residues within 4Å:- Chain A: G.220, L.221, E.222
- Ligands: GOL.6
Ligand excluded by PLIPGOL.12: 6 residues within 4Å:- Chain A: I.13, G.34
- Chain B: Y.65, R.280, N.285
- Ligands: PJ7.1
Ligand excluded by PLIPGOL.13: 3 residues within 4Å:- Chain A: G.67, I.68, D.69
Ligand excluded by PLIPGOL.20: 5 residues within 4Å:- Chain A: P.9, D.11
- Chain B: I.68, A.277, R.280
Ligand excluded by PLIPGOL.21: 5 residues within 4Å:- Chain B: A.218, R.315, Q.316, Q.319
- Ligands: GOL.22
Ligand excluded by PLIPGOL.22: 3 residues within 4Å:- Chain B: R.315, Q.316
- Ligands: GOL.21
Ligand excluded by PLIPGOL.23: 8 residues within 4Å:- Chain B: G.216, G.220, L.221, E.308, L.311, T.312, R.315
- Ligands: GOL.28
Ligand excluded by PLIPGOL.24: 7 residues within 4Å:- Chain B: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
Ligand excluded by PLIPGOL.25: 3 residues within 4Å:- Chain B: Y.150, L.353, S.372
Ligand excluded by PLIPGOL.26: 3 residues within 4Å:- Chain B: Y.55, N.300, L.303
Ligand excluded by PLIPGOL.27: 5 residues within 4Å:- Chain B: P.189, T.190, L.191, R.219, N.345
Ligand excluded by PLIPGOL.28: 4 residues within 4Å:- Chain B: G.220, L.221, E.222
- Ligands: GOL.23
Ligand excluded by PLIPGOL.29: 6 residues within 4Å:- Chain A: Y.65, R.280, N.285
- Chain B: I.13, G.34
- Ligands: PJ7.18
Ligand excluded by PLIPGOL.30: 3 residues within 4Å:- Chain B: G.67, I.68, D.69
Ligand excluded by PLIP- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.14: 2 residues within 4Å:- Chain A: P.72, R.76
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.73
- Salt bridges: A:R.76
SO4.15: 1 residues within 4Å:- Chain A: R.360
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.360
SO4.16: 3 residues within 4Å:- Chain A: R.96, D.269, K.276
7 PLIP interactions:7 interactions with chain A- Water bridges: A:R.96, A:K.276, A:K.276, A:K.276, A:K.276
- Salt bridges: A:R.96, A:K.276
SO4.17: 4 residues within 4Å:- Chain A: K.134, N.138, E.143, V.144
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.138, A:E.143, A:V.144, A:V.144
- Water bridges: A:K.134, A:K.134, A:K.134
- Salt bridges: A:K.134
SO4.31: 2 residues within 4Å:- Chain B: P.72, R.76
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.73
- Salt bridges: B:R.76
SO4.32: 1 residues within 4Å:- Chain B: R.360
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.360
SO4.33: 3 residues within 4Å:- Chain B: R.96, D.269, K.276
7 PLIP interactions:7 interactions with chain B- Water bridges: B:R.96, B:K.276, B:K.276, B:K.276, B:K.276
- Salt bridges: B:R.96, B:K.276
SO4.34: 4 residues within 4Å:- Chain B: K.134, N.138, E.143, V.144
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:N.138, B:V.144, B:V.144
- Water bridges: B:K.134, B:K.134, B:K.134
- Salt bridges: B:K.134
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Mechanism of inactivation of Escherichia coli aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid . Biochemistry (2010)
- Release Date
- 2010-12-01
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PJ7: 4-aminofuran-2-carboxylic acid(Covalent)
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 22 x GOL: GLYCEROL(Non-functional Binders)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Mechanism of inactivation of Escherichia coli aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid . Biochemistry (2010)
- Release Date
- 2010-12-01
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A