SMTL ID : 2qmd.1 (1 other biounit)

Structure of BACE Bound to SCH722924

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.1: 1 residues within 4Å: Chain A: K.248 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.248 Salt bridges: A:K.248 TAR.3: 5 residues within 4Å: Chain A: R.16, N.37, H.58, R.59, N.123 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.37, A:H.58, A:N.123 Water bridges: A:R.59, A:R.59, A:R.59, A:N.123 Salt bridges: A:R.16, A:H.58, A:R.59, A:R.59

1 x CS7: N'-[(1S,2R)-2-[(2R,4R)-4-(BENZYLOXY)PYRROLIDIN-2-YL]-1-(3,5-DIFLUOROBENZYL)-2-HYDROXYETHYL]-5-METHYL-N,N-DIPROPYLISOPHTHALAMIDE(Non-covalent)

CS7.2: 23 residues within 4Å: Chain A: G.20, Q.21, L.39, D.41, G.43, S.44, V.78, P.79, Y.80, T.81, Q.82, G.83, K.116, F.117, I.119, W.124, I.135, Y.207, I.235, D.237, G.239, T.240, T.241 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.39, A:V.78, A:Y.80, A:Q.82, A:Q.82, A:F.117 Hydrogen bonds: A:D.41, A:T.81, A:T.81, A:Q.82, A:Y.207, A:D.237, A:G.239, A:T.241 Water bridges: A:N.242 pi-Stacking: A:Y.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iserloh, U. et al., Potent pyrrolidine- and piperidine-based BACE-1 inhibitors. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-03-11

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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