- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.2: 15 residues within 4Å:- Chain A: Y.90, G.134, G.135, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:Y.90, A:Y.648, A:V.650, A:K.680
- Hydrogen bonds: A:T.676, A:T.676, A:G.677
- Water bridges: A:Y.90, A:G.135, A:K.574, A:N.678, A:N.678
- Salt bridges: A:K.568, A:K.574
PLP.6: 15 residues within 4Å:- Chain B: Y.90, G.134, G.135, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:Y.90, B:Y.648, B:V.650, B:K.680
- Hydrogen bonds: B:Y.648, B:T.676, B:T.676, B:G.677
- Water bridges: B:G.135, B:K.574, B:N.678, B:N.678
- Salt bridges: B:K.568, B:K.574
- 4 x NBY: N-{[(4-nitrophenyl)carbonyl]carbamoyl}-beta-D-glucopyranosylamine(Non-covalent)
NBY.3: 18 residues within 4Å:- Chain A: R.60, L.63, V.64, W.67, P.188, W.189, E.190, K.191, P.229
- Chain B: F.37, T.38, L.39, V.40, F.53, H.57, R.60, P.188
- Ligands: NBY.7
9 PLIP interactions:4 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:V.40, A:V.64, A:W.67, A:K.191
- Hydrogen bonds: B:T.38, B:H.57, B:R.60, A:E.190
- pi-Cation interactions: A:R.60
NBY.4: 19 residues within 4Å:- Chain A: E.88, N.133, G.135, L.136, L.139, N.282, D.283, F.285, F.286, H.341, H.377, A.383, V.455, N.484, Y.573, E.672, A.673, S.674, G.675
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:D.283
- Hydrogen bonds: A:L.136, A:A.383, A:N.484, A:Y.573, A:E.672, A:E.672, A:S.674, A:S.674, A:G.675
- Water bridges: A:G.135, A:G.137, A:H.377, A:T.378, A:Y.573, A:A.673, A:T.676
NBY.7: 18 residues within 4Å:- Chain A: F.37, T.38, L.39, V.40, F.53, H.57, R.60, P.188
- Chain B: R.60, L.63, V.64, W.67, P.188, W.189, E.190, K.191, P.229
- Ligands: NBY.3
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:V.64, B:W.67, B:K.191, A:V.40
- Hydrogen bonds: B:E.190, A:T.38, A:H.57, A:R.60
- pi-Cation interactions: B:R.60
NBY.8: 19 residues within 4Å:- Chain B: E.88, N.133, G.135, L.136, L.139, N.282, D.283, F.285, F.286, H.341, H.377, A.383, V.455, N.484, Y.573, E.672, A.673, S.674, G.675
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:D.283
- Hydrogen bonds: B:L.136, B:H.377, B:A.383, B:N.484, B:E.672, B:S.674, B:S.674, B:G.675
- Water bridges: B:G.135, B:G.137, B:H.377, B:T.378, B:Y.573, B:Y.573, B:Y.573, B:A.673, B:T.676
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nagy, V. et al., N-(4-substituted-benzoyl)-N'-(beta-D-glucopyranosyl)ureas, inhibitors of glycogen phosphorylase: synthesis, kinetic and crystallographic evaluation. To be Published
- Release Date
- 2008-07-22
- Peptides
- Glycogen phosphorylase, muscle form: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 4 x NBY: N-{[(4-nitrophenyl)carbonyl]carbamoyl}-beta-D-glucopyranosylamine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nagy, V. et al., N-(4-substituted-benzoyl)-N'-(beta-D-glucopyranosyl)ureas, inhibitors of glycogen phosphorylase: synthesis, kinetic and crystallographic evaluation. To be Published
- Release Date
- 2008-07-22
- Peptides
- Glycogen phosphorylase, muscle form: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A