- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 5 residues within 4Å:- Chain A: H.11, R.287, V.289, A.290
- Ligands: AMZ.4
Ligand excluded by PLIPCL.7: 5 residues within 4Å:- Chain B: H.11, R.287, V.289, A.290
- Ligands: AMZ.9
Ligand excluded by PLIPCL.12: 5 residues within 4Å:- Chain C: H.11, R.287, V.289, A.290
- Ligands: AMZ.14
Ligand excluded by PLIP- 3 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.3: 12 residues within 4Å:- Chain A: P.116, I.130, K.132, Y.142, Q.173, E.174, Y.175, V.176, Y.227, F.282, E.283
- Chain B: R.212
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.132, A:Y.142, A:Q.173, A:V.176, B:R.212
- Water bridges: A:E.283
- Salt bridges: A:R.101, A:K.132
- pi-Stacking: A:F.282, A:F.282
AMP.8: 12 residues within 4Å:- Chain B: P.116, I.130, K.132, Y.142, Q.173, E.174, Y.175, V.176, Y.227, F.282, E.283
- Chain C: R.212
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:K.132, B:Y.142, B:Q.173, B:V.176, C:R.212
- Water bridges: B:E.283
- Salt bridges: B:R.101, B:K.132
- pi-Stacking: B:F.282, B:F.282
AMP.13: 12 residues within 4Å:- Chain A: R.212
- Chain C: P.116, I.130, K.132, Y.142, Q.173, E.174, Y.175, V.176, Y.227, F.282, E.283
10 PLIP interactions:9 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:K.132, C:Y.142, C:Q.173, C:V.176, A:R.212
- Water bridges: C:E.283
- Salt bridges: C:R.101, C:K.132
- pi-Stacking: C:F.282, C:F.282
- 3 x AMZ: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE(Non-covalent)
AMZ.4: 14 residues within 4Å:- Chain A: S.10, H.11, G.70, S.71, A.74, H.75, R.202, V.229, G.231, N.232, A.290
- Chain C: R.238, S.240
- Ligands: CL.2
18 PLIP interactions:13 interactions with chain A, 5 interactions with chain C- Hydrogen bonds: A:S.10, A:S.71, A:R.202, A:N.232, A:N.232, C:S.240
- Water bridges: A:H.11, A:R.202, A:R.202, A:V.229, A:R.287, A:G.291, C:R.238, C:R.238, C:S.240
- Salt bridges: A:H.75, C:R.238
- pi-Cation interactions: A:H.11
AMZ.9: 14 residues within 4Å:- Chain A: R.238, S.240
- Chain B: S.10, H.11, G.70, S.71, A.74, H.75, R.202, V.229, G.231, N.232, A.290
- Ligands: CL.7
18 PLIP interactions:13 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:S.10, B:S.71, B:R.202, B:N.232, B:N.232, A:S.240
- Water bridges: B:H.11, B:R.202, B:R.202, B:V.229, B:R.287, B:G.291, A:R.238, A:R.238, A:S.240
- Salt bridges: B:H.75, A:R.238
- pi-Cation interactions: B:H.11
AMZ.14: 14 residues within 4Å:- Chain B: R.238, S.240
- Chain C: S.10, H.11, G.70, S.71, A.74, H.75, R.202, V.229, G.231, N.232, A.290
- Ligands: CL.12
18 PLIP interactions:13 interactions with chain C, 5 interactions with chain B- Hydrogen bonds: C:S.10, C:S.71, C:R.202, C:N.232, C:N.232, B:S.240
- Water bridges: C:H.11, C:R.202, C:R.202, C:V.229, C:R.287, C:G.291, B:R.238, B:R.238, B:S.240
- Salt bridges: C:H.75, B:R.238
- pi-Cation interactions: C:H.11
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 8 residues within 4Å:- Chain A: P.128, L.144, Y.175, L.177
- Chain B: I.213, D.217, F.221, M.223
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:I.213, B:F.221, B:F.221, A:P.128, A:L.144, A:Y.175
MPD.10: 8 residues within 4Å:- Chain B: P.128, L.144, Y.175, L.177
- Chain C: I.213, D.217, F.221, M.223
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain B- Hydrophobic interactions: C:I.213, C:F.221, C:F.221, B:P.128, B:L.144, B:Y.175
MPD.15: 8 residues within 4Å:- Chain A: I.213, D.217, F.221, M.223
- Chain C: P.128, L.144, Y.175, L.177
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:P.128, C:L.144, C:Y.175, A:I.213, A:F.221, A:F.221
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii. Biochemistry (2008)
- Release Date
- 2007-12-04
- Peptides
- PurP protein PF1517: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 3 x AMZ: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE(Non-covalent)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii. Biochemistry (2008)
- Release Date
- 2007-12-04
- Peptides
- PurP protein PF1517: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B