- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.3: 14 residues within 4Å:- Chain A: P.116, I.130, K.132, G.139, Y.142, Q.173, E.174, Y.175, V.176, Y.227, F.282, E.283
- Chain C: R.212
- Ligands: MPD.5
13 PLIP interactions:12 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:K.132, A:G.139, A:Q.173, A:V.176, C:R.212
- Water bridges: A:R.101, A:K.132, A:Y.142, A:R.202, A:R.202
- Salt bridges: A:K.132
- pi-Stacking: A:F.282, A:F.282
AMP.4: 7 residues within 4Å:- Chain A: S.10, S.71, A.74, H.75
- Chain B: R.238, S.240, L.277
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:S.10, A:S.71, A:S.71, A:A.74, B:S.240
- Water bridges: A:H.11, B:R.238, B:R.238, B:S.240
- Salt bridges: A:H.75, B:R.238
- pi-Cation interactions: A:H.75
AMP.9: 14 residues within 4Å:- Chain A: R.212
- Chain B: P.116, I.130, K.132, G.139, Y.142, Q.173, E.174, Y.175, V.176, Y.227, F.282, E.283
- Ligands: MPD.11
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:K.132, B:G.139, B:Q.173, B:V.176, A:R.212
- Water bridges: B:R.101, B:K.132, B:Y.142, B:R.202, B:R.202
- Salt bridges: B:K.132
- pi-Stacking: B:F.282, B:F.282
AMP.10: 7 residues within 4Å:- Chain B: S.10, S.71, A.74, H.75
- Chain C: R.238, S.240, L.277
12 PLIP interactions:5 interactions with chain C, 7 interactions with chain B- Hydrogen bonds: C:S.240, B:S.10, B:S.71, B:S.71, B:A.74
- Water bridges: C:R.238, C:R.238, C:S.240, B:H.11
- Salt bridges: C:R.238, B:H.75
- pi-Cation interactions: B:H.75
AMP.15: 14 residues within 4Å:- Chain B: R.212
- Chain C: P.116, I.130, K.132, G.139, Y.142, Q.173, E.174, Y.175, V.176, Y.227, F.282, E.283
- Ligands: MPD.17
13 PLIP interactions:12 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:K.132, C:G.139, C:Q.173, C:V.176, B:R.212
- Water bridges: C:R.101, C:K.132, C:Y.142, C:R.202, C:R.202
- Salt bridges: C:K.132
- pi-Stacking: C:F.282, C:F.282
AMP.16: 7 residues within 4Å:- Chain A: R.238, S.240, L.277
- Chain C: S.10, S.71, A.74, H.75
12 PLIP interactions:5 interactions with chain A, 7 interactions with chain C- Hydrogen bonds: A:S.240, C:S.10, C:S.71, C:S.71, C:A.74
- Water bridges: A:R.238, A:R.238, A:S.240, C:H.11
- Salt bridges: A:R.238, C:H.75
- pi-Cation interactions: C:H.75
- 6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 9 residues within 4Å:- Chain A: I.130, Y.142, F.143, L.144, Y.227
- Chain C: I.213, P.214, D.217
- Ligands: AMP.3
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:D.217
- Hydrophobic interactions: A:L.144
MPD.6: 7 residues within 4Å:- Chain A: L.144, Y.175, L.177
- Chain C: I.213, D.217, F.221, M.223
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:L.144, A:Y.175, C:F.221, C:F.221
- Hydrogen bonds: A:Y.175
MPD.11: 9 residues within 4Å:- Chain A: I.213, P.214, D.217
- Chain B: I.130, Y.142, F.143, L.144, Y.227
- Ligands: AMP.9
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.144
- Hydrogen bonds: A:D.217
MPD.12: 7 residues within 4Å:- Chain A: I.213, D.217, F.221, M.223
- Chain B: L.144, Y.175, L.177
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:F.221, A:F.221, B:L.144, B:Y.175
- Hydrogen bonds: B:Y.175
MPD.17: 9 residues within 4Å:- Chain B: I.213, P.214, D.217
- Chain C: I.130, Y.142, F.143, L.144, Y.227
- Ligands: AMP.15
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:L.144
- Hydrogen bonds: B:D.217
MPD.18: 7 residues within 4Å:- Chain B: I.213, D.217, F.221, M.223
- Chain C: L.144, Y.175, L.177
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:L.144, C:Y.175, B:F.221, B:F.221
- Hydrogen bonds: C:Y.175
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii. Biochemistry (2008)
- Release Date
- 2007-12-04
- Peptides
- PurP protein PF1517: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii. Biochemistry (2008)
- Release Date
- 2007-12-04
- Peptides
- PurP protein PF1517: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A