- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.3: 13 residues within 4Å:- Chain A: P.116, I.130, K.132, Y.142, Q.173, E.174, Y.175, V.176, Y.227, F.282, E.283
- Chain B: R.212
- Ligands: MPD.5
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.132, A:Y.142, A:Q.173, A:V.176, B:R.212
- Water bridges: A:Y.182, A:R.202, A:E.283
- Salt bridges: A:K.132
- pi-Stacking: A:F.282, A:F.282
AMP.4: 7 residues within 4Å:- Chain A: S.10, S.71, A.74, H.75
- Chain C: R.238, S.240, L.277
13 PLIP interactions:5 interactions with chain C, 8 interactions with chain A- Hydrogen bonds: C:S.240, A:S.10, A:S.71, A:A.74
- Water bridges: C:R.238, C:R.238, C:S.240, A:H.11, A:H.75, A:H.75
- Salt bridges: C:R.238, A:H.75
- pi-Stacking: A:H.75
AMP.9: 13 residues within 4Å:- Chain B: P.116, I.130, K.132, Y.142, Q.173, E.174, Y.175, V.176, Y.227, F.282, E.283
- Chain C: R.212
- Ligands: MPD.11
11 PLIP interactions:10 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:K.132, B:Y.142, B:Q.173, B:V.176, C:R.212
- Water bridges: B:Y.182, B:R.202, B:E.283
- Salt bridges: B:K.132
- pi-Stacking: B:F.282, B:F.282
AMP.10: 7 residues within 4Å:- Chain A: R.238, S.240, L.277
- Chain B: S.10, S.71, A.74, H.75
13 PLIP interactions:8 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:S.10, B:S.71, B:A.74, A:S.240
- Water bridges: B:H.11, B:H.75, B:H.75, A:R.238, A:R.238, A:S.240
- Salt bridges: B:H.75, A:R.238
- pi-Stacking: B:H.75
AMP.15: 13 residues within 4Å:- Chain A: R.212
- Chain C: P.116, I.130, K.132, Y.142, Q.173, E.174, Y.175, V.176, Y.227, F.282, E.283
- Ligands: MPD.17
11 PLIP interactions:10 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:K.132, C:Y.142, C:Q.173, C:V.176, A:R.212
- Water bridges: C:Y.182, C:R.202, C:E.283
- Salt bridges: C:K.132
- pi-Stacking: C:F.282, C:F.282
AMP.16: 7 residues within 4Å:- Chain B: R.238, S.240, L.277
- Chain C: S.10, S.71, A.74, H.75
13 PLIP interactions:5 interactions with chain B, 8 interactions with chain C- Hydrogen bonds: B:S.240, C:S.10, C:S.71, C:A.74
- Water bridges: B:R.238, B:R.238, B:S.240, C:H.11, C:H.75, C:H.75
- Salt bridges: B:R.238, C:H.75
- pi-Stacking: C:H.75
- 6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 8 residues within 4Å:- Chain A: I.130, Y.142, F.143, Y.175, Y.227
- Chain B: P.214, D.217
- Ligands: AMP.3
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Y.175, B:D.217
- Water bridges: A:Y.227
MPD.6: 8 residues within 4Å:- Chain A: P.128, L.144, Y.175, L.177
- Chain B: I.213, D.217, F.221, M.223
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:F.221, B:F.221, B:F.221, A:P.128, A:L.144, A:Y.175
MPD.11: 8 residues within 4Å:- Chain B: I.130, Y.142, F.143, Y.175, Y.227
- Chain C: P.214, D.217
- Ligands: AMP.9
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:Y.175, C:D.217
- Water bridges: B:Y.227
MPD.12: 8 residues within 4Å:- Chain B: P.128, L.144, Y.175, L.177
- Chain C: I.213, D.217, F.221, M.223
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain B- Hydrophobic interactions: C:F.221, C:F.221, C:F.221, B:P.128, B:L.144, B:Y.175
MPD.17: 8 residues within 4Å:- Chain A: P.214, D.217
- Chain C: I.130, Y.142, F.143, Y.175, Y.227
- Ligands: AMP.15
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:D.217, C:Y.175
- Water bridges: C:Y.227
MPD.18: 8 residues within 4Å:- Chain A: I.213, D.217, F.221, M.223
- Chain C: P.128, L.144, Y.175, L.177
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:P.128, C:L.144, C:Y.175, A:F.221, A:F.221, A:F.221
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii. Biochemistry (2008)
- Release Date
- 2007-12-04
- Peptides
- PurP protein PF1517: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii. Biochemistry (2008)
- Release Date
- 2007-12-04
- Peptides
- PurP protein PF1517: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B