SMTL ID : 2rgs.1

FC-fragment of monoclonal antibody IGG2B from Mus musculus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- MAN- MAN- NAG- GAL- MAN- NAG- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.1: 16 residues within 4Å: Chain A: F.13, F.15, P.16, N.18, K.30, T.32, V.34, V.36, D.37, Y.68, N.69, T.71, R.73 Ligands: NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.2, NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.2, NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.68 Hydrogen bonds: A:F.15, A:N.18, A:K.30, A:K.30, A:T.32, A:T.32 Water bridges: A:N.18, A:D.21, A:K.30 NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.2: 18 residues within 4Å: Chain B: F.13, F.15, P.16, N.18, D.21, K.30, T.32, V.34, V.36, D.37, E.66, Y.68, N.69, T.71, R.73 Ligands: NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.1, NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.1, NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.1 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.68 Hydrogen bonds: B:F.15, B:N.18, B:D.21, B:K.30, B:K.30 Water bridges: B:N.18, B:D.21, B:S.11, B:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolenko, P. et al., New insights into intra- and intermolecular interactions of immunoglobulins: crystal structure of mouse IgG2b-Fc at 2.1-A resolution. Immunology (2008)

Release Date

2008-10-07

Peptides

Ig gamma-2B heavy chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-2B heavy chain

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