SMTL ID : 6kru.1 (2 other biounits)

Crystal structure of mouse IgG2b Fc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- MAN- MAN- NAG- GAL- MAN- NAG- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.1: 16 residues within 4Å: Chain A: V.12, F.13, F.15, P.16, P.17, N.18, D.21, K.30, T.32, V.36, D.37, E.66, Y.68, N.69, R.73, R.106 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.68, A:F.13 Hydrogen bonds: A:F.15, A:N.18, A:D.21, A:D.21, A:K.30, A:K.30 NAG-NAG-MAN-MAN-NAG-GAL-MAN-NAG-FUC.2: 16 residues within 4Å: Chain B: F.13, F.15, P.16, P.17, N.18, D.21, K.30, T.32, V.34, V.36, D.37, E.66, Y.68, N.69, T.71, R.73 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.68, B:F.13 Hydrogen bonds: B:F.15, B:N.18, B:D.21, B:D.21, B:K.30, B:K.30, B:T.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yanaka, S. et al., On-Membrane Dynamic Interplay between Anti-GM1 IgG Antibodies and Complement Component C1q. Int J Mol Sci (2019)

Release Date

2020-01-22

Peptides

Ig gamma-2B chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-2B chain C region

Related Entries With Identical Sequence