SMTL ID : 6krv.1 (1 other biounit)

Crystal structure of mouse IgG2b Fc complexed with B domain of Protein A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-2-1-mer

Ligands

1 x NAG- NAG- MAN- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-NAG-MAN-NAG-FUC.1: 11 residues within 4Å: Chain A: V.12, F.13, F.15, T.32, V.36, D.37, E.66, Y.68, N.69, R.73, R.106 No protein-ligand interaction detected (PLIP)

1 x NAG- MAN- MAN- NAG- MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-MAN-MAN-NAG-MAN-NAG.2: 2 residues within 4Å: Chain B: F.15, T.32 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yanaka, S. et al., On-Membrane Dynamic Interplay between Anti-GM1 IgG Antibodies and Complement Component C1q. Int J Mol Sci (2019)

Release Date

2020-01-22

Peptides

Ig gamma-2B chain C region: AB
Immunoglobulin G-binding protein A: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

Ig gamma-2B chain C region

Immunoglobulin G-binding protein A

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