SMTL ID : 2uzi.1

Crystal structure of HRAS(G12V) - anti-RAS Fv complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.73, S.75 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.73, A:S.75, H2O.3, H2O.5 ZN.2: 1 residues within 4Å: Chain A: D.62 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.62, A:D.62 ZN.5: 1 residues within 4Å: Chain C: H.27 No protein-ligand interaction detected (PLIP) ZN.6: 1 residues within 4Å: Chain C: H.166 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.166 ZN.7: 2 residues within 4Å: Chain C: D.108, H.166 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.108, C:D.108, C:H.166

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.3: 26 residues within 4Å: Chain C: A.11, V.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, E.31, Y.32, P.34, T.35, T.58, A.59, G.60, N.116, K.117, D.119, L.120, S.145, A.146, K.147 Ligands: MG.4 25 PLIP interactions: 24 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:G.13, C:V.14, C:G.15, C:K.16, C:S.17, C:A.18, C:V.29, C:T.35, C:T.35, C:T.58, C:G.60, C:N.116, C:K.117, C:K.117, C:A.146, C:K.147 Water bridges: C:D.33, C:Q.61, C:Q.61, A:R.53 Salt bridges: C:K.16, C:K.16, C:D.119 pi-Stacking: C:F.28, C:F.28

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain C: S.17, T.35, D.57 Ligands: GTP.3 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.17, C:T.35, H2O.8, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, T. et al., Tumour Prevention by a Single Antibody Domain Targeting the Interaction of Signal Transduction Proteins with Ras. Embo J. (2007)

Release Date

2007-06-26

Peptides

ANTI-RAS FV HEAVY CHAIN: A
ANTI-RAS FV LIGHT CHAIN: B
GTPASE HRAS: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
R

ANTI-RAS FV HEAVY CHAIN

ANTI-RAS FV LIGHT CHAIN

GTPASE HRAS

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