SMTL ID : 2v3e.2 (1 other biounit)

acid-beta-glucosidase with N-nonyl-deoxynojirimycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 4 residues within 4Å: Chain A: I.7, N.21, T.23, Y.24 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.24

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: T.140, H.147, N.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.140, A:N.148

1 x NND: (2R,3R,4R,5S)-2-(HYDROXYMETHYL)-1-NONYLPIPERIDINE-3,4,5-TRIOL(Non-covalent)

NND.3: 14 residues within 4Å: Chain A: D.129, F.130, W.181, N.236, E.237, L.243, F.248, Q.286, Y.315, L.316, E.342, S.347, W.383, N.398 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.243, A:Y.315, A:Y.315, A:L.316 Hydrogen bonds: A:D.129, A:N.236, A:E.237, A:N.398, A:N.398 Water bridges: A:E.237, A:S.347, A:N.398 Salt bridges: A:E.237, A:E.342 pi-Cation interactions: A:Y.315

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain A: Y.13, S.14, R.355, S.358, W.359, D.360 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.14, A:S.14, A:S.358, A:S.358, A:W.359, A:D.360 Water bridges: A:S.358 Salt bridges: A:R.355

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brumshtein, B. et al., Crystal Structures of Complexes of N-Butyl- and N-Nonyl-Deoxynojirimycin Bound to Acid Beta-Glucosidase: Insights Into the Mechanism of Chemical Chaperone Action in Gaucher Disease. J.Biol.Chem. (2007)

Release Date

2007-08-21

Peptides

GLUCOSYLCERAMIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GLUCOSYLCERAMIDASE

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