SMTL ID : 2xwe.1 (1 other biounit)

X-RAY STRUCTURE OF ACID-BETA-GLUCOSIDASE WITH 5N,6S-(N'-(N-OCTYL)IMINO)-6-THIONOJIRIMYCIN IN THE ACTIVE SITE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 3 residues within 4Å: Chain A: I.7, N.21, Y.24 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.24

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: Y.13, S.14, R.355, S.358, W.359, D.360 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.14, A:S.14, A:S.358, A:S.358, A:W.359, A:D.360 Water bridges: A:R.46, A:R.355, A:S.358 Salt bridges: A:R.355

1 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: G.346, K.348, E.351, S.353 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:G.346, A:K.348, A:E.351

1 x AMF: (3Z,5S,6R,7S,8R,8aS)-3-(octylimino)hexahydro[1,3]thiazolo[3,4-a]pyridine-5,6,7,8-tetrol(Non-covalent)

AMF.4: 18 residues within 4Å: Chain A: D.129, F.130, W.181, N.236, E.237, L.243, Y.246, F.248, Q.286, H.313, Y.315, L.316, E.342, C.344, S.347, W.383, N.398, V.400 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.243, A:Y.315, A:L.316 Hydrogen bonds: A:D.129, A:W.181, A:N.236, A:E.237, A:Y.246, A:N.398 Water bridges: A:E.237, A:E.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brumshtein, B. et al., Cyclodextrin-Mediated Crystallization of Acid Beta-Glucosidase in Complex with Amphiphilic Bicyclic Nojirimycin Analogues. Org.Biomol.Chem. (2011)

Release Date

2011-09-14

Peptides

GLUCOSYLCERAMIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLUCOSYLCERAMIDASE

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