SMTL ID : 2v3f.2 (1 other biounit)

acid-beta-glucosidase produced in carrot

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG.1: 4 residues within 4Å: Chain A: I.7, N.21, T.23, Y.24 No protein-ligand interaction detected (PLIP)

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.2: 13 residues within 4Å: Chain A: D.129, F.130, W.181, N.236, E.237, Y.246, F.248, Y.315, E.342, C.344, S.347, W.383, V.400 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.236, A:N.236, A:E.237, A:W.383 Water bridges: A:E.237, A:Y.246 Salt bridges: A:D.129, A:E.237, A:E.342

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.46, S.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.47 Water bridges: A:R.46, A:R.46 Salt bridges: A:R.46 SO4.4: 4 residues within 4Å: Chain A: G.195, K.196, S.244, G.245 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.196, A:G.245 Water bridges: A:N.190, A:G.245 SO4.5: 4 residues within 4Å: Chain A: K.81, W.230, R.279, H.308 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.230 Water bridges: A:K.81, A:E.431 Salt bridges: A:K.81, A:R.279, A:H.308 SO4.6: 6 residues within 4Å: Chain A: Y.13, S.14, R.355, S.358, W.359, D.360 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.14, A:S.14, A:W.359, A:D.360 Water bridges: A:R.355, A:S.358 Salt bridges: A:R.355 SO4.7: 6 residues within 4Å: Chain A: P.5, C.6, G.48, R.49, R.50, E.52 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.6, A:R.50, A:E.52, A:E.52 SO4.8: 3 residues within 4Å: Chain A: R.287, H.367, T.371 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.287, A:R.287, A:R.287, A:R.287, A:R.287 Salt bridges: A:R.287, A:H.367 SO4.9: 6 residues within 4Å: Chain A: G.267, L.270, A.271, H.276, V.278, Y.306 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.306 Water bridges: A:H.276, A:L.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaaltiel, Y. et al., Production of Glucocerebrosidase with Terminal Mannose Glycans for Enzyme Replacement Therapy of Gaucher'S Disease Using a Plant Cell System. Plant Biotechnol.J. (2007)

Release Date

2008-04-08

Peptides

GLUCOSYLCERAMIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GLUCOSYLCERAMIDASE

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