SMTL ID : 2vdw.2 (3 other biounits)

Guanosine N7 methyl-transferase sub-complex (D1-D12) of the vaccinia virus mRNA capping enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.18, R.20, N.59, R.90 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.59 Salt bridges: A:R.18, A:R.20, A:R.90 SO4.3: 1 residues within 4Å: Chain A: F.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.128

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 18 residues within 4Å: Chain A: R.6, L.7, N.8, Y.13, F.14, K.31, D.56, F.57, G.58, A.61, D.78, P.79, D.80, R.113, Q.136, F.137, A.138, Y.141 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.6, A:L.7, A:L.7, A:N.8, A:D.56, A:G.58, A:R.113 Salt bridges: A:K.31 pi-Stacking: A:Y.141 pi-Cation interactions: A:R.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De La Pena, M. et al., Structural Insights Into the Mechanism and Evolution of the Vaccinia Virus Mrna CAP N7 Methyl- Transferase. Embo J. (2007)

Release Date

2008-05-13

Peptides

VACCINIA VIRUS CAPPING ENZYME D1 SUBUNIT: A
MRNA-CAPPING ENZYME SMALL SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

VACCINIA VIRUS CAPPING ENZYME D1 SUBUNIT

MRNA-CAPPING ENZYME SMALL SUBUNIT

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