SMTL ID : 4ckb.1 (1 other biounit)

Vaccinia virus capping enzyme complexed with GTP and SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: R.548, L.549, N.550, K.573, D.598, F.599, G.600, A.603, D.604, D.620, P.621, D.622, R.655, Q.678, F.679, A.680, Y.683 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.548, A:L.549, A:L.549, A:N.550, A:D.598, A:G.600, A:R.655, A:Q.678 Salt bridges: A:K.573 pi-Stacking: A:Y.683

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 16 residues within 4Å: Chain A: I.237, T.239, V.258, K.260, T.261, P.265, F.301, E.303, I.315, K.350, I.378, D.390, K.392, D.400, R.493, K.496 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.239, A:T.261, A:K.350, A:D.400 Water bridges: A:R.327 Salt bridges: A:K.260, A:K.260, A:D.390, A:K.392, A:K.392, A:K.394, A:R.493, A:R.493, A:K.496

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kyrieleis, O.J.P. et al., Crystal Structure of Vaccinia Virus Mrna Capping Enzyme Provides Insights Into the Mechanism and Evolution of the Capping Apparatus. Structure (2014)

Release Date

2014-03-19

Peptides

MRNA-CAPPING ENZYME CATALYTIC SUBUNIT: A
MRNA-CAPPING ENZYME REGULATORY SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

MRNA-CAPPING ENZYME CATALYTIC SUBUNIT

MRNA-CAPPING ENZYME REGULATORY SUBUNIT

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