SMTL ID : 2vj3.1

Human Notch-1 EGFs 11-13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.44, V.45, E.47, D.61, Q.62 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.44, A:V.45, A:D.61, A:Q.62, H2O.1 CA.2: 6 residues within 4Å: Chain A: D.4, V.5, E.7, N.23, T.24, S.27 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.4, A:V.5, A:E.7, A:S.27, H2O.1 CA.3: 5 residues within 4Å: Chain A: N.82, T.83, E.85, D.99, K.100 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.83, A:E.85, A:D.99, A:K.100, H2O.1 CA.4: 2 residues within 4Å: Chain A: E.103, H.115 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.103, A:H.115

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain A: L.116, C.117, Q.118 Ligands: CL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.116, A:Q.118, A:Q.118 NA.6: 1 residues within 4Å: Chain A: E.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.75

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: G.114, H.115 Ligands: NA.5 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: Q.67, C.68, V.77 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cordle, J. et al., A Conserved Face of the Jagged/Serrate Dsl Domain is Involved in Notch Trans-Activation and Cis-Inhibition. Nat.Struct.Mol.Biol. (2008)

Release Date

2008-07-29

Peptides

NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1

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