SMTL ID : 4d0e.1

Human Notch1 EGF domains 11-13 mutant GlcNAc-fucose disaccharide modified at T466

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x FUC- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose(Post Translational Modification)

FUC-NAG.1: 5 residues within 4Å: Chain A: D.56, T.58, I.69, C.70, M.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.58, A:D.56

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.44, V.45, E.47, D.61, Q.62 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.44, A:D.61, A:Q.62, H2O.3, H2O.3 CA.3: 5 residues within 4Å: Chain A: N.82, T.83, E.85, D.99, K.100 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.83, A:E.85, A:D.99, A:K.100, H2O.4 CA.4: 7 residues within 4Å: Chain A: D.4, V.5, E.7, N.23, T.24, G.26, S.27 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.4, A:V.5, A:E.7, A:T.24, A:S.27 CA.5: 2 residues within 4Å: Chain A: E.103, H.115 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.103, A:E.103, A:H.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, P. et al., Fringe-Mediated Extension of O-Linked Fucose in the Ligand-Binding Region of Notch1 Increases Binding to Mammalian Notch Ligands. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-05-21

Peptides

NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1

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