SMTL ID : 4cud.1

Human Notch1 EGF domains 11-13 mutant fucosylated at T466

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x FUC: alpha-L-fucopyranose(Post Translational Modification)

FUC.1: 5 residues within 4Å: Chain A: D.56, T.58, I.69, C.70, M.71 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.69 Hydrogen bonds: A:T.58 FUC.6: 5 residues within 4Å: Chain B: D.56, T.58, I.69, C.70, M.71 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.69 Hydrogen bonds: B:T.58

8 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.44, V.45, E.47, D.61, Q.62 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.44, A:V.45, A:D.61, H2O.1, H2O.1 CA.3: 5 residues within 4Å: Chain A: N.82, T.83, E.85, D.99, K.100 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.83, A:E.85, A:D.99, A:K.100, H2O.2 CA.4: 7 residues within 4Å: Chain A: D.4, V.5, E.7, N.23, T.24, G.26, S.27 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.4, A:V.5, A:E.7, A:T.24, A:S.27 CA.5: 7 residues within 4Å: Chain A: E.103, F.104, H.115 Chain B: E.103, F.104, H.115 Ligands: CA.10 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:E.103, B:H.115, A:E.103, A:H.115 CA.7: 5 residues within 4Å: Chain B: D.44, V.45, E.47, D.61, Q.62 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.44, B:V.45, B:D.61, H2O.3, H2O.3 CA.8: 5 residues within 4Å: Chain B: N.82, T.83, E.85, D.99, K.100 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.83, B:E.85, B:D.99, B:K.100, H2O.4 CA.9: 7 residues within 4Å: Chain B: D.4, V.5, E.7, N.23, T.24, G.26, S.27 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.4, B:V.5, B:E.7, B:T.24, B:S.27 CA.10: 7 residues within 4Å: Chain A: E.103, F.104, H.115 Chain B: E.103, F.104, H.115 Ligands: CA.5 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:E.103, B:H.115, A:E.103, A:H.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, P. et al., Fringe-Mediated Extension of O-Linked Fucose in the Ligand-Binding Region of Notch1 Increases Binding to Mammalian Notch Ligands. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-05-21

Peptides

NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1

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