SMTL ID : 2vn0.1

CYP2C8DH COMPLEXED WITH TROGLITAZONE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: R.79, I.94, I.95, W.102, R.106, L.113, A.279, G.280, T.283, T.284, T.287, Q.338, L.343, V.348, H.350, L.373, P.409, F.410, S.411, R.415, C.417, A.418, G.419, L.422, A.423, E.426 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:I.95, A:L.113, A:L.343, A:V.348, A:L.373, A:F.410, A:F.410, A:A.418, A:L.422 Hydrogen bonds: A:S.411, A:S.411 Salt bridges: A:R.79, A:R.79, A:R.106, A:H.350, A:R.415 Metal complexes: A:C.417

1 x TDZ: (5R)-5-(4-{[(2R)-6-HYDROXY-2,5,7,8-TETRAMETHYL-3,4-DIHYDRO-2H-CHROMEN-2-YL]METHOXY}BENZYL)-1,3-THIAZOLIDINE-2,4-DIONE(Non-covalent)

TDZ.2: 13 residues within 4Å: Chain A: I.88, T.89, F.183, N.186, F.187, L.190, N.191, V.219, R.223, V.278, E.282, T.283, I.458 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.187, A:L.190, A:N.191, A:V.278, A:V.278, A:T.283, A:I.458 Hydrogen bonds: A:N.186, A:R.223, A:R.223, A:E.282 pi-Stacking: A:F.187

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.3: 11 residues within 4Å: Chain A: I.84, R.87, I.88, S.192, W.194, I.195, C.198, I.205, T.211, H.212, L.216 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.84, A:I.84, A:R.87, A:I.88, A:W.194, A:I.195, A:I.205, A:L.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schoch, G.A. et al., Determinants of cytochrome P450 2C8 substrate binding: structures of complexes with montelukast, troglitazone, felodipine, and 9-cis-retinoic acid. J. Biol. Chem. (2008)

Release Date

2008-04-29

Peptides

CYTOCHROME P450 2C8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME P450 2C8

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