SMTL ID : 2vnm.1

Human BACE-1 in complex with 3-(1,1-dioxidotetrahydro-2H-1,2-thiazin- 2-yl)-5-(ethylamino)-N-((1S,2R)-2-hydroxy-1-(phenylmethyl)-3-(((3-(trifluoromethyl)phenyl)methyl)amino)propyl)benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

2 x CM8: N-[(1S,2R)-1-benzyl-2-hydroxy-3-{[3-(trifluoromethyl)benzyl]amino}propyl]-3-(1,1-dioxido-1,2-thiazinan-2-yl)-5-(ethylamino)benzamide

CM8.1: 25 residues within 4Å: Chain A: G.12, Q.13, G.14, L.31, D.33, G.35, S.36, V.70, P.71, Y.72, T.73, Q.74, F.109, W.116, I.119, I.127, R.129, Y.199, D.229, G.231, T.232, T.233, N.234, R.236, S.326 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.31, A:Y.72, A:Y.72, A:Q.74, A:F.109, A:W.116, A:W.116, A:I.119, A:Y.199 Hydrogen bonds: A:G.12, A:D.33, A:T.73, A:T.73, A:Q.74, A:D.229, A:G.231, A:T.232, A:T.233, A:T.233, A:N.234, A:N.234, A:S.326 Halogen bonds: A:R.129 CM8.2: 5 residues within 4Å: Chain A: S.23, L.85, T.95, R.97, Q.144 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.85, A:L.85, A:R.97 Water bridges: A:R.97, A:Q.144 Halogen bonds: A:Q.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charrier, N. et al., Second Generation of Hydroxyethylamine Bace-1 Inhibitors: Optimizing Potency and Oral Bioavailability. J.Med.Chem. (2008)

Release Date

2008-05-20

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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