SMTL ID : 2wf3.1

Human BACE-1 in complex with 6-(ethylamino)-N-((1S,2R)-2-hydroxy-3-(((3-(methyloxy)phenyl)methyl)amino)-1-(phenylmethyl)propyl)-1-methyl-1, 3,4,5-tetrahydro-2,1-benzothiazepine-8-carboxamide 2,2-dioxide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x ZY3: N-{(1S,2R)-1-BENZYL-2-HYDROXY-3-[(3-METHOXYBENZYL)AMINO]PROPYL}-6-(ETHYLAMINO)-1-METHYL-1,3,4,5-TETRAHYDRO-2,1-BENZOTHIAZEPINE-8-CARBOXAMIDE 2,2-DIOXIDE(Non-covalent)

ZY3.1: 24 residues within 4Å: Chain A: G.12, Q.13, G.14, L.31, D.33, G.35, S.36, P.71, Y.72, T.73, Q.74, F.109, I.111, W.116, I.119, Y.199, D.229, G.231, T.232, T.233, N.234, R.236, S.326 Ligands: GOL.3 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:L.31, A:Y.72, A:Q.74, A:F.109, A:F.109, A:I.111, A:W.116, A:W.116, A:I.119, A:Y.199 Hydrogen bonds: A:D.33, A:T.73, A:T.73, A:Q.74, A:D.229, A:G.231, A:T.232, A:T.233, A:T.233, A:N.234, A:N.234, A:S.326 Water bridges: A:G.12, A:Q.74, A:T.233

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: K.10, S.11, G.12, Q.13, G.14, Y.15, T.233, R.308, A.336, V.337, E.340 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.12, A:Q.13, A:G.14, A:G.14, A:T.233, A:E.340 GOL.3: 6 residues within 4Å: Chain A: N.234, R.308, K.322, F.323, A.324 Ligands: ZY3.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.234, A:R.308, A:R.308 Water bridges: A:Q.74 GOL.4: 9 residues within 4Å: Chain A: T.20, V.21, G.22, S.23, P.25, L.85, V.86, S.87, T.95 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.20, A:T.20, A:S.23, A:S.87, A:S.87, A:T.95 GOL.5: 6 residues within 4Å: Chain A: Y.69, K.76, E.78, E.105, S.106, D.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.105, A:E.105, A:S.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charrier, N. et al., Second Generation of Bace-1 Inhibitors Part 2: Optimisation of the Non-Prime Side Substituent. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-05-19

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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