SMTL ID : 2vsc.2 (1 other biounit)

Structure of the immunoglobulin-superfamily ectodomain of human CD47

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: V.10, E.11, F.12, N.16, V.19, V.20 Chain B: L.111 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.10, A:F.12, A:V.19, B:L.111 Hydrogen bonds: A:E.11, A:N.16, A:V.20 Water bridges: A:E.11, A:E.11, A:T.13 NAG.2: 3 residues within 4Å: Chain A: N.32, T.34 Ligands: NAG.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.34 Water bridges: A:Q.31 NAG.3: 3 residues within 4Å: Chain A: T.34, N.55 Ligands: NAG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.55 NAG.4: 3 residues within 4Å: Chain A: N.93 Chain B: I.108, E.110 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:N.93 Hydrogen bonds: B:E.110 NAG.6: 5 residues within 4Å: Chain B: E.11, F.12, N.16, V.19, V.20 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.12, B:V.19 Hydrogen bonds: B:E.11, B:N.16, B:V.20 NAG.7: 2 residues within 4Å: Chain B: N.32, T.34 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.32, B:T.34 Water bridges: B:N.32

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: L.101 Chain B: L.101 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hatherley, D. et al., Paired Receptor Specificity Explained by Structures of Signal Regulatory Proteins Alone and Complexed with Cd47. Mol.Cell (2008)

Release Date

2008-08-12

Peptides

LEUKOCYTE SURFACE ANTIGEN CD47: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

LEUKOCYTE SURFACE ANTIGEN CD47

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