SMTL ID : 4cmm.1

Structure of human CD47 in complex with human Signal Regulatory Protein (SIRP) alpha v1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain B: V.10, E.11, F.12, N.16, V.19, V.20, L.111 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.10, B:F.12, B:V.19, B:L.111 Hydrogen bonds: B:E.11, B:N.16, B:V.20 Water bridges: B:T.18 NAG.2: 1 residues within 4Å: Chain B: N.32 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.32 Water bridges: B:N.32, B:T.33 NAG.3: 2 residues within 4Å: Chain B: N.5, F.24 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.24 NAG.4: 2 residues within 4Å: Chain B: N.93, E.110 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.93, B:E.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hatherley, D. et al., Polymorphisms in the Human Inhibitory Signal-Regulatory Protein Alpha Do not Affect Binding to its Ligand Cd47. J.Biol.Chem. (2014)

Release Date

2014-02-26

Peptides

TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE SUBSTRATE 1: A
LEUKOCYTE SURFACE ANTIGEN CD47: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE SUBSTRATE 1

LEUKOCYTE SURFACE ANTIGEN CD47

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