SMTL ID : 2vu2.1

Biosynthetic thiolase from Z. ramigera. Complex with S-pantetheine-11- pivalate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-tetramer

Ligands

2 x PN5: (3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-({3-oxo-3-[(2-sulfanylethyl)amino]propyl}amino)butyl 2,2-dimethylpropanoate

PN5.1: 14 residues within 4Å: Chain A: C.89, L.148, H.156, M.157, F.235, A.243, S.247, G.248, L.249, M.288, A.318, F.319, H.348 Chain D: M.134 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.249 Hydrogen bonds: A:H.156 Water bridges: A:Y.218 PN5.5: 15 residues within 4Å: Chain B: C.89, L.148, H.156, M.157, A.234, F.235, A.243, S.247, G.248, L.249, M.288, A.318, F.319, H.348 Chain C: M.134 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.234, B:F.235 Hydrogen bonds: B:H.156, B:H.156

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: S.260, E.263, R.266 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.260, A:E.263 Water bridges: A:S.260, A:S.260 Salt bridges: A:R.266 SO4.3: 3 residues within 4Å: Chain A: K.298, R.302 Chain B: G.106 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Water bridges: A:E.301, B:G.106 Salt bridges: A:K.298, A:R.302 SO4.4: 3 residues within 4Å: Chain A: R.41, V.200, P.201 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.41 Salt bridges: A:R.41 SO4.6: 2 residues within 4Å: Chain B: K.298, R.302 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.298 Salt bridges: B:K.298, B:R.302 SO4.7: 3 residues within 4Å: Chain B: S.260, A.262, R.266 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.260, B:S.260 Water bridges: B:E.261 Salt bridges: B:R.266 SO4.8: 5 residues within 4Å: Chain B: E.40, R.41, I.199, V.200, P.201 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.41 Salt bridges: B:R.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Merilainen, G. et al., The Sulfur Atoms of the Substrate Coa and the Catalytic Cysteine are Required for a Productive Mode of Substrate Binding in Bacterial Biosynthetic Thiolase, a Thioester-Dependent Enzyme. FEBS J. (2008)

Release Date

2008-10-28

Peptides

ACETYL-COA ACETYLTRANSFERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ACETYL-COA ACETYLTRANSFERASE

Related Entries With Identical Sequence