SMTL ID : 2vwy.1

ephB4 kinase domain inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 7X5: N'-(5-chloro-1,3-benzodioxol-4-yl)-N-(3-methylsulfonylphenyl)pyrimidine-2,4-diamine

7X5.1: 16 residues within 4Å: Chain A: I.24, G.25, V.32, A.48, I.49, K.50, E.67, I.80, I.94, T.96, E.97, F.98, M.99, G.102, L.150, S.160 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.24, A:A.48, A:K.50, A:I.80, A:L.150 Hydrogen bonds: A:K.50, A:M.99, A:M.99

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.143, D.161 Ligands: MG.3 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.143, A:D.161, H2O.5, H2O.5, H2O.5, H2O.5 MG.3: 4 residues within 4Å: Chain A: H.141, D.143, D.161 Ligands: MG.2 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain A: D.112 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bardelle, C. et al., Inhibitors of the Tyrosine Kinase Ephb4. Part 2: Structure-Based Discovery and Optimisation of 3,5-Bis Substituted Anilinopyrimidines. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-10-28

Peptides

EPHRIN TYPE-B RECEPTOR 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EPHRIN TYPE-B RECEPTOR 4

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