SMTL ID : 2x9f.1

ephB4 kinase domain inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x X9F: N^4^-1H-INDAZOL-4-YL-N^2^-[3-(METHYLSULFONYL)PHENYL]PYRIMIDINE-2,4-DIAMINE(Non-covalent)

X9F.1: 16 residues within 4Å: Chain A: I.24, V.32, A.48, K.50, E.67, I.80, T.96, E.97, F.98, M.99, E.100, N.101, G.102, L.150, S.160, D.161 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.24, A:I.24, A:K.50, A:K.50, A:I.80, A:T.96, A:F.98, A:L.150 Hydrogen bonds: A:E.67, A:M.99, A:M.99, A:D.161 Water bridges: A:D.161, A:D.161 pi-Cation interactions: A:K.50

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: E.28, D.143, N.148, D.161 Ligands: MG.3 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.143, A:D.161, H2O.2, H2O.2, H2O.2, H2O.5 MG.3: 4 residues within 4Å: Chain A: H.141, D.143, D.161 Ligands: MG.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bardelle, C. et al., Inhibitors of the Tyrosine Kinase Ephb4. Part 3: Identification of Non-Benzodioxole-Based Kinase Inhibitors. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-09-29

Peptides

EPHRIN TYPE-B RECEPTOR 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EPHRIN TYPE-B RECEPTOR 4

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