SMTL ID : 2xvd.1

ephB4 kinase domain inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x AS6: {4-METHYL-3-[(1-METHYLETHYL)(2-{[3-(METHYLSULFONYL)-5-MORPHOLIN-4-YLPHENYL]AMINO}PYRIMIDIN-4-YL)AMINO]PHENYL}METHANOL(Non-covalent)

AS6.1: 17 residues within 4Å: Chain A: I.24, G.25, V.32, A.48, I.49, K.50, E.67, M.71, T.96, E.97, F.98, M.99, E.100, G.102, L.150, S.160, D.161 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.24, A:V.32, A:K.50, A:T.96, A:L.150 Hydrogen bonds: A:M.99, A:M.99, A:D.161

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.143, D.161 Ligands: MG.4 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.143, A:D.161, H2O.4, H2O.5, H2O.5, H2O.5 MG.3: 1 residues within 4Å: Chain A: E.75 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: D.143, D.161 Ligands: MG.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barlaam, B. et al., Inhibitors of the Tyrosine Kinase Ephb4. Part 4: Discovery and Optimization of a Benzylic Alcohol Series. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-06-08

Peptides

EPHRIN TYPE-B RECEPTOR 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EPHRIN TYPE-B RECEPTOR 4

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