SMTL ID : 2vx3.2 (3 other biounits)

Crystal structure of the human dual specificity tyrosine- phosphorylation-regulated kinase 1A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x D15: N-(5-{[(2S)-4-amino-2-(3-chlorophenyl)butanoyl]amino}-1H-indazol-3-yl)benzamide

D15.1: 23 residues within 4Å: Chain A: I.62, G.63, K.64, G.65, F.67, G.68, Q.69, V.70, A.83, K.85, F.135, E.136, M.137, L.138, S.139, Y.140, N.189, L.191, V.203, D.204 Ligands: CL.2, P6G.3, SO4.6 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.62, A:V.70, A:F.135, A:Y.140, A:L.191, A:V.203, A:D.204 Hydrogen bonds: A:E.136, A:L.138, A:L.138

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: K.85, D.204 Ligands: D15.1 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: L.320, H.321, K.350 Ligand excluded by PLIP

3 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.3: 6 residues within 4Å: Chain A: D.59, I.62, K.72, W.81, M.137 Ligands: D15.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.72 P6G.4: 5 residues within 4Å: Chain A: L.94, Q.98, V.101, H.124, M.126 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.98 P6G.5: 3 residues within 4Å: Chain A: D.144, R.147, N.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.147, A:N.148

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: G.65, S.66, K.186 Ligands: D15.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.66, A:D.204 Salt bridges: A:K.186 SO4.7: 4 residues within 4Å: Chain A: Y.218, N.262, E.263, K.290 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.263, A:E.263, A:E.263 Salt bridges: A:K.290 SO4.8: 3 residues within 4Å: Chain A: K.161, R.197, S.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.198, A:S.198 Salt bridges: A:K.161, A:R.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soundararajan, M. et al., Structures of Down Syndrome Kinases, Dyrks, Reveal Mechanisms of Kinase Activation and Substrate Recognition. Structure (2013)

Release Date

2008-09-16

Peptides

DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION- REGULATED KINASE 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION- REGULATED KINASE 1A

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