SMTL ID : 7zh8.3 (3 other biounits)

DYRK1a in Complex with a Bromo-Triazolo-Pyridine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 2 residues within 4Å: Chain A: Y.369 Ligands: SO4.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.369 PEG.5: 2 residues within 4Å: Chain A: P.315, G.316 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.319 PEG.6: 3 residues within 4Å: Chain A: E.177, Q.210, L.211 No protein-ligand interaction detected (PLIP)

2 x IWU: 6-bromanyl-3H-[1,2,3]triazolo[4,5-b]pyridine(Non-covalent)

IWU.2: 6 residues within 4Å: Chain A: K.85, F.135, E.136, L.191, V.203, D.204 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.135, A:V.203 Hydrogen bonds: A:D.204 Water bridges: A:D.204, A:D.204 IWU.4: 7 residues within 4Å: Chain A: V.273, L.274, K.319, L.320, H.321, K.350, L.354 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.354 Hydrogen bonds: A:L.320, A:H.321 Water bridges: A:K.319, A:K.319 pi-Cation interactions: A:K.319

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 5 residues within 4Å: Chain A: Q.98, V.101, H.124, M.126, L.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.98 Water bridges: A:N.95

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: S.155, N.157, L.158 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.155, A:N.157, A:L.158 Water bridges: A:S.155, A:S.155 GOL.8: 4 residues within 4Å: Chain A: L.61, I.62, G.63, K.64 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.61

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.9: 2 residues within 4Å: Chain A: L.302, K.304 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.304

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.10: 6 residues within 4Å: Chain A: Y.218, N.262, E.263, V.264, K.290 Ligands: CL.13 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.263, A:V.264, A:K.290 Salt bridges: A:E.263, A:K.290

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 6 residues within 4Å: Chain A: T.363, R.364, I.365, Q.366, Y.369 Ligands: PEG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.366, A:Q.366 SO4.12: 3 residues within 4Å: Chain A: K.161, R.197, S.198 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.198, A:S.198 Salt bridges: A:K.161

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.13: 2 residues within 4Å: Chain A: K.290 Ligands: EPE.10 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dammann, M. et al., Screening of a Halogen-Enriched Fragment Library Leads to Unconventional Binding Modes. J.Med.Chem. (2022)

Release Date

2022-11-09

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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