SMTL ID : 2vxi.1

THE BINDING OF HEME AND ZINC IN ESCHERICHIA COLI BACTERIOFERRITIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-24-mer

Ligands

24 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Ligands: HEM.7 17 PLIP interactions: 11 interactions with chain A, 6 interactions with chain B, Hydrophobic interactions: A:L.19, A:I.22, A:F.26, A:F.26, A:F.26, A:I.49, A:M.52, B:L.19, B:I.22, B:I.22, B:F.26, B:M.52 Water bridges: A:Y.45, A:K.53, A:K.53 Salt bridges: A:K.53, B:K.53 HEM.7: 20 residues within 4Å: Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Ligands: HEM.1 24 PLIP interactions: 11 interactions with chain A, 9 interactions with chain B, 4 Ligand-Ligand interactions Hydrophobic interactions: A:L.19, A:I.22, A:F.26, A:F.26, A:I.49, A:M.52, A:A.55, A:I.59, B:L.19, B:I.22, B:I.22, B:F.26, B:F.26, B:M.52, B:L.71 Water bridges: A:K.53, A:K.53, B:Y.45 Salt bridges: A:K.53, B:K.53 Metal complexes: HEM.7, HEM.7, HEM.7, HEM.7 HEM.14: 19 residues within 4Å: Chain C: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.20 18 PLIP interactions: 8 interactions with chain D, 10 interactions with chain C, Hydrophobic interactions: D:L.19, D:I.22, D:F.26, D:F.26, D:I.49, D:I.49, D:M.52, C:L.19, C:I.22, C:I.22, C:F.26, C:F.26, C:M.52, C:A.55, C:I.59 Salt bridges: D:K.53, C:K.53 Water bridges: C:Y.45 HEM.20: 18 residues within 4Å: Chain C: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Ligands: HEM.14 15 PLIP interactions: 7 interactions with chain D, 8 interactions with chain C, Hydrophobic interactions: D:L.19, D:I.22, D:F.26, D:I.49, D:I.49, D:M.52, C:L.19, C:I.22, C:I.22, C:F.26, C:F.26, C:M.52 Salt bridges: D:K.53, C:K.53 Water bridges: C:Y.45 HEM.25: 17 residues within 4Å: Chain E: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.31 19 PLIP interactions: 8 interactions with chain E, 11 interactions with chain F, Hydrophobic interactions: E:L.19, E:I.22, E:I.22, E:F.26, E:I.49, E:I.49, E:M.52, F:L.19, F:I.22, F:F.26, F:F.26, F:F.26, F:I.49, F:M.52 Salt bridges: E:K.53, F:K.53 Water bridges: F:Y.45, F:K.53, F:K.53 HEM.31: 18 residues within 4Å: Chain E: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.25 19 PLIP interactions: 9 interactions with chain E, 10 interactions with chain F, Hydrophobic interactions: E:L.19, E:I.22, E:I.22, E:F.26, E:I.49, E:I.49, E:M.52, E:L.71, F:L.19, F:I.22, F:F.26, F:F.26, F:I.49, F:M.52 Salt bridges: E:K.53, F:K.53 Water bridges: F:Y.45, F:K.53, F:K.53 HEM.35: 19 residues within 4Å: Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Ligands: HEM.40 16 PLIP interactions: 8 interactions with chain G, 8 interactions with chain H, Hydrophobic interactions: G:L.19, G:I.22, G:F.26, G:F.26, G:I.49, G:M.52, H:L.19, H:I.22, H:I.22, H:F.26, H:F.26, H:M.52, H:L.71 Water bridges: G:Y.45 Salt bridges: G:K.53, H:K.53 HEM.40: 18 residues within 4Å: Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.35 17 PLIP interactions: 10 interactions with chain G, 7 interactions with chain H, Hydrophobic interactions: G:L.19, G:I.22, G:F.26, G:F.26, G:F.26, G:I.49, G:M.52, G:L.71, H:L.19, H:I.22, H:I.22, H:F.26, H:F.26, H:M.52 Water bridges: G:Y.45 Salt bridges: G:K.53, H:K.53 HEM.46: 17 residues within 4Å: Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.51 17 PLIP interactions: 11 interactions with chain J, 6 interactions with chain I, Hydrophobic interactions: J:L.19, J:I.22, J:I.22, J:F.26, J:F.26, J:F.26, J:I.49, J:I.49, J:M.52, I:L.19, I:I.22, I:F.26, I:I.49, I:M.52 Water bridges: J:Y.45 Salt bridges: J:K.53, I:K.53 HEM.51: 18 residues within 4Å: Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Ligands: HEM.46 18 PLIP interactions: 9 interactions with chain I, 9 interactions with chain J, Hydrophobic interactions: I:L.19, I:I.22, I:I.22, I:F.26, I:F.26, I:I.49, I:M.52, J:L.19, J:I.22, J:I.22, J:F.26, J:F.26, J:I.49, J:I.49, J:M.52 Water bridges: I:Y.45 Salt bridges: I:K.53, J:K.53 HEM.56: 18 residues within 4Å: Chain K: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Ligands: HEM.61 14 PLIP interactions: 7 interactions with chain K, 7 interactions with chain L, Hydrophobic interactions: K:L.19, K:I.22, K:F.26, K:I.49, K:I.49, K:M.52, L:L.19, L:I.22, L:I.22, L:F.26, L:I.49, L:M.52 Salt bridges: K:K.53, L:K.53 HEM.61: 18 residues within 4Å: Chain K: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.56 15 PLIP interactions: 8 interactions with chain K, 7 interactions with chain L, Hydrophobic interactions: K:L.19, K:I.22, K:F.26, K:F.26, K:I.49, K:I.49, K:M.52, L:L.19, L:I.22, L:F.26, L:F.26, L:M.52 Salt bridges: K:K.53, L:K.53 Water bridges: L:Y.45 HEM.66: 18 residues within 4Å: Chain M: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Ligands: HEM.72 18 PLIP interactions: 7 interactions with chain N, 11 interactions with chain M, Hydrophobic interactions: N:L.19, N:I.22, N:I.22, N:F.26, N:M.52, M:L.19, M:I.22, M:F.26, M:F.26, M:F.26, M:I.49, M:M.52 Water bridges: N:Y.45, M:Y.45, M:K.53, M:K.53 Salt bridges: N:K.53, M:K.53 HEM.72: 20 residues within 4Å: Chain M: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Ligands: HEM.66 25 PLIP interactions: 10 interactions with chain N, 11 interactions with chain M, 4 Ligand-Ligand interactions Hydrophobic interactions: N:L.19, N:I.22, N:I.22, N:F.26, N:F.26, N:M.52, N:L.71, M:L.19, M:I.22, M:F.26, M:F.26, M:I.49, M:M.52, M:A.55, M:I.59 Water bridges: N:Y.45, N:Y.45, M:K.53, M:K.53 Salt bridges: N:K.53, M:K.53 Metal complexes: HEM.72, HEM.72, HEM.72, HEM.72 HEM.79: 19 residues within 4Å: Chain O: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.85 18 PLIP interactions: 8 interactions with chain P, 10 interactions with chain O, Hydrophobic interactions: P:L.19, P:I.22, P:F.26, P:F.26, P:I.49, P:I.49, P:M.52, O:L.19, O:I.22, O:I.22, O:F.26, O:F.26, O:M.52, O:A.55, O:I.59 Salt bridges: P:K.53, O:K.53 Water bridges: O:Y.45 HEM.85: 18 residues within 4Å: Chain O: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Ligands: HEM.79 15 PLIP interactions: 8 interactions with chain O, 7 interactions with chain P, Hydrophobic interactions: O:L.19, O:I.22, O:I.22, O:F.26, O:F.26, O:M.52, P:L.19, P:I.22, P:F.26, P:I.49, P:I.49, P:M.52 Water bridges: O:Y.45 Salt bridges: O:K.53, P:K.53 HEM.90: 17 residues within 4Å: Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.96 18 PLIP interactions: 10 interactions with chain R, 8 interactions with chain Q, Hydrophobic interactions: R:L.19, R:I.22, R:F.26, R:F.26, R:F.26, R:I.49, R:M.52, Q:L.19, Q:I.22, Q:I.22, Q:F.26, Q:I.49, Q:I.49, Q:M.52 Water bridges: R:K.53, R:K.53 Salt bridges: R:K.53, Q:K.53 HEM.96: 18 residues within 4Å: Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.90 18 PLIP interactions: 9 interactions with chain R, 9 interactions with chain Q, Hydrophobic interactions: R:L.19, R:I.22, R:F.26, R:F.26, R:I.49, R:M.52, Q:L.19, Q:I.22, Q:I.22, Q:F.26, Q:I.49, Q:I.49, Q:M.52, Q:L.71 Water bridges: R:K.53, R:K.53 Salt bridges: R:K.53, Q:K.53 HEM.100: 19 residues within 4Å: Chain S: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Ligands: HEM.105 16 PLIP interactions: 8 interactions with chain T, 8 interactions with chain S, Hydrophobic interactions: T:L.19, T:I.22, T:I.22, T:F.26, T:F.26, T:M.52, T:L.71, S:L.19, S:I.22, S:F.26, S:F.26, S:I.49, S:M.52 Salt bridges: T:K.53, S:K.53 Water bridges: S:Y.45 HEM.105: 18 residues within 4Å: Chain S: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.100 21 PLIP interactions: 7 interactions with chain T, 10 interactions with chain S, 4 Ligand-Ligand interactions Hydrophobic interactions: T:L.19, T:I.22, T:I.22, T:F.26, T:F.26, T:M.52, S:L.19, S:I.22, S:F.26, S:F.26, S:F.26, S:I.49, S:M.52, S:L.71 Salt bridges: T:K.53, S:K.53 Water bridges: S:Y.45 Metal complexes: HEM.105, HEM.105, HEM.105, HEM.105 HEM.111: 17 residues within 4Å: Chain U: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.116 19 PLIP interactions: 12 interactions with chain V, 7 interactions with chain U, Hydrophobic interactions: V:L.19, V:I.22, V:I.22, V:F.26, V:F.26, V:F.26, V:I.49, V:I.49, V:M.52, U:L.19, U:I.22, U:F.26, U:I.49, U:M.52 Water bridges: V:Y.45, V:Y.45, U:Y.45 Salt bridges: V:K.53, U:K.53 HEM.116: 18 residues within 4Å: Chain U: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Ligands: HEM.111 20 PLIP interactions: 10 interactions with chain V, 10 interactions with chain U, Hydrophobic interactions: V:L.19, V:I.22, V:I.22, V:F.26, V:F.26, V:I.49, V:I.49, V:M.52, U:L.19, U:I.22, U:I.22, U:F.26, U:F.26, U:I.49, U:M.52 Water bridges: V:Y.45, U:Y.45, U:Y.45 Salt bridges: V:K.53, U:K.53 HEM.121: 18 residues within 4Å: Chain W: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Ligands: HEM.126 15 PLIP interactions: 7 interactions with chain W, 8 interactions with chain X, Hydrophobic interactions: W:L.19, W:I.22, W:F.26, W:I.49, W:I.49, W:M.52, X:L.19, X:I.22, X:I.22, X:F.26, X:I.49, X:M.52 Salt bridges: W:K.53, X:K.53 Water bridges: X:Y.45 HEM.126: 18 residues within 4Å: Chain W: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56 Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Ligands: HEM.121 16 PLIP interactions: 8 interactions with chain W, 8 interactions with chain X, Hydrophobic interactions: W:L.19, W:I.22, W:F.26, W:F.26, W:I.49, W:I.49, W:M.52, X:L.19, X:I.22, X:F.26, X:F.26, X:M.52 Salt bridges: W:K.53, X:K.53 Water bridges: X:Y.45, X:Y.45

48 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: E.51, E.94, E.127, H.130 Ligands: ZN.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.51, A:E.94, A:E.94, A:E.127, A:H.130 ZN.3: 5 residues within 4Å: Chain A: E.18, E.51, H.54, E.127 Ligands: ZN.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.18, A:E.18, A:E.51, A:H.54, A:E.127 ZN.8: 5 residues within 4Å: Chain B: E.51, E.94, E.127, H.130 Ligands: ZN.9 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.51, B:E.94, B:E.94, B:E.127, B:H.130 ZN.9: 5 residues within 4Å: Chain B: E.18, E.51, H.54, E.127 Ligands: ZN.8 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.18, B:E.51, B:H.54, B:E.127, H2O.264 ZN.15: 4 residues within 4Å: Chain C: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.51, C:E.94, C:E.94, C:E.127, C:H.130 ZN.16: 4 residues within 4Å: Chain C: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.18, C:E.18, C:E.51, C:H.54, C:E.127 ZN.21: 4 residues within 4Å: Chain D: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.51, D:E.94, D:E.94, D:E.127, D:H.130 ZN.22: 4 residues within 4Å: Chain D: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.18, D:E.18, D:E.51, D:H.54, D:E.127 ZN.26: 5 residues within 4Å: Chain E: E.51, E.94, E.127, H.130 Ligands: ZN.27 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.51, E:E.94, E:E.94, E:E.127, E:H.130 ZN.27: 5 residues within 4Å: Chain E: E.18, E.51, H.54, E.127 Ligands: ZN.26 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.18, E:E.18, E:E.51, E:H.54, E:E.127 ZN.32: 5 residues within 4Å: Chain F: E.51, E.94, E.127, H.130 Ligands: ZN.33 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.51, F:E.94, F:E.94, F:E.127, F:H.130 ZN.33: 5 residues within 4Å: Chain F: E.18, E.51, H.54, E.127 Ligands: ZN.32 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.18, F:E.18, F:E.51, F:H.54, F:E.127 ZN.36: 5 residues within 4Å: Chain G: E.51, E.94, E.127, H.130 Ligands: ZN.37 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.51, G:E.94, G:E.94, G:E.127, G:H.130 ZN.37: 5 residues within 4Å: Chain G: E.18, E.51, H.54, E.127 Ligands: ZN.36 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.18, G:E.18, G:E.51, G:H.54, G:E.127 ZN.41: 5 residues within 4Å: Chain H: E.51, E.94, E.127, H.130 Ligands: ZN.42 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.51, H:E.94, H:E.94, H:E.127, H:H.130 ZN.42: 5 residues within 4Å: Chain H: E.18, E.51, H.54, E.127 Ligands: ZN.41 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.18, H:E.18, H:E.51, H:H.54, H:E.127 ZN.47: 5 residues within 4Å: Chain I: E.51, E.94, E.127, H.130 Ligands: ZN.48 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:E.94, I:E.94, I:E.127, I:H.130, H2O.1576 ZN.48: 5 residues within 4Å: Chain I: E.18, E.51, H.54, E.127 Ligands: ZN.47 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.18, I:E.18, I:E.51, I:H.54, I:E.127 ZN.52: 5 residues within 4Å: Chain J: E.51, E.94, E.127, H.130 Ligands: ZN.53 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:E.94, J:E.94, J:E.127, J:H.130, H2O.1762 ZN.53: 5 residues within 4Å: Chain J: E.18, E.51, H.54, E.127 Ligands: ZN.52 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.18, J:E.18, J:E.51, J:H.54, J:E.127 ZN.57: 4 residues within 4Å: Chain K: E.51, E.94, E.127, H.130 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:E.51, K:E.94, K:E.127, K:H.130, H2O.1939 ZN.58: 4 residues within 4Å: Chain K: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.18, K:E.18, K:E.51, K:H.54, K:E.127 ZN.62: 5 residues within 4Å: Chain L: E.51, E.94, E.127, H.130 Ligands: ZN.63 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.51, L:E.94, L:E.94, L:E.127, L:H.130 ZN.63: 5 residues within 4Å: Chain L: E.18, E.51, H.54, E.127 Ligands: ZN.62 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.18, L:E.18, L:E.51, L:H.54, L:E.127 ZN.67: 5 residues within 4Å: Chain M: E.51, E.94, E.127, H.130 Ligands: ZN.68 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.51, M:E.94, M:E.94, M:E.127, M:H.130 ZN.68: 5 residues within 4Å: Chain M: E.18, E.51, H.54, E.127 Ligands: ZN.67 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.18, M:E.18, M:E.51, M:H.54, M:E.127 ZN.73: 5 residues within 4Å: Chain N: E.51, E.94, E.127, H.130 Ligands: ZN.74 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.51, N:E.94, N:E.94, N:E.127, N:H.130 ZN.74: 5 residues within 4Å: Chain N: E.18, E.51, H.54, E.127 Ligands: ZN.73 5 PLIP interactions: 4 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:E.18, N:E.51, N:H.54, N:E.127, H2O.2472 ZN.80: 4 residues within 4Å: Chain O: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.51, O:E.94, O:E.94, O:E.127, O:H.130 ZN.81: 4 residues within 4Å: Chain O: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.18, O:E.18, O:E.51, O:H.54, O:E.127 ZN.86: 4 residues within 4Å: Chain P: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.51, P:E.94, P:E.94, P:E.127, P:H.130 ZN.87: 4 residues within 4Å: Chain P: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.18, P:E.18, P:E.51, P:H.54, P:E.127 ZN.91: 5 residues within 4Å: Chain Q: E.51, E.94, E.127, H.130 Ligands: ZN.92 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.51, Q:E.94, Q:E.94, Q:E.127, Q:H.130 ZN.92: 5 residues within 4Å: Chain Q: E.18, E.51, H.54, E.127 Ligands: ZN.91 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.18, Q:E.18, Q:E.51, Q:H.54, Q:E.127 ZN.97: 5 residues within 4Å: Chain R: E.51, E.94, E.127, H.130 Ligands: ZN.98 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.51, R:E.94, R:E.94, R:E.127, R:H.130 ZN.98: 5 residues within 4Å: Chain R: E.18, E.51, H.54, E.127 Ligands: ZN.97 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.18, R:E.18, R:E.51, R:H.54, R:E.127 ZN.101: 5 residues within 4Å: Chain S: E.51, E.94, E.127, H.130 Ligands: ZN.102 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.51, S:E.94, S:E.94, S:E.127, S:H.130 ZN.102: 5 residues within 4Å: Chain S: E.18, E.51, H.54, E.127 Ligands: ZN.101 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.18, S:E.18, S:E.51, S:H.54, S:E.127 ZN.106: 5 residues within 4Å: Chain T: E.51, E.94, E.127, H.130 Ligands: ZN.107 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.51, T:E.94, T:E.94, T:E.127, T:H.130 ZN.107: 5 residues within 4Å: Chain T: E.18, E.51, H.54, E.127 Ligands: ZN.106 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.18, T:E.18, T:E.51, T:H.54, T:E.127 ZN.112: 5 residues within 4Å: Chain U: E.51, E.94, E.127, H.130 Ligands: ZN.113 5 PLIP interactions: 4 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:E.94, U:E.94, U:E.127, U:H.130, H2O.3784 ZN.113: 5 residues within 4Å: Chain U: E.18, E.51, H.54, E.127 Ligands: ZN.112 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:E.18, U:E.18, U:E.51, U:H.54, U:E.127 ZN.117: 5 residues within 4Å: Chain V: E.51, E.94, E.127, H.130 Ligands: ZN.118 5 PLIP interactions: 4 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:E.94, V:E.94, V:E.127, V:H.130, H2O.3970 ZN.118: 5 residues within 4Å: Chain V: E.18, E.51, H.54, E.127 Ligands: ZN.117 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.18, V:E.18, V:E.51, V:H.54, V:E.127 ZN.122: 4 residues within 4Å: Chain W: E.51, E.94, E.127, H.130 5 PLIP interactions: 4 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:E.51, W:E.94, W:E.127, W:H.130, H2O.4147 ZN.123: 4 residues within 4Å: Chain W: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:E.18, W:E.18, W:E.51, W:H.54, W:E.127 ZN.127: 5 residues within 4Å: Chain X: E.51, E.94, E.127, H.130 Ligands: ZN.128 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.51, X:E.94, X:E.94, X:E.127, X:H.130 ZN.128: 5 residues within 4Å: Chain X: E.18, E.51, H.54, E.127 Ligands: ZN.127 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.18, X:E.18, X:E.51, X:H.54, X:E.127

58 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.57, M.119 Chain Q: R.125 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: S.110, H.112 Ligand excluded by PLIP SO4.10: 6 residues within 4Å: Chain B: R.117, I.121 Chain D: R.117, I.121 Chain F: R.117, I.121 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: R.57, M.119 Chain D: R.125 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: R.125 Chain F: R.57, M.119 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain C: R.117, I.121 Chain K: R.117, I.121 Chain S: R.117, I.121 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain C: R.57, M.119 Chain K: R.125 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain C: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain D: R.57, M.119 Chain F: R.125 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain D: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain E: R.117, I.121 Chain M: R.117 Chain U: R.117, I.121 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain E: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain E: R.57, M.119 Chain U: R.125 Ligand excluded by PLIP SO4.34: 3 residues within 4Å: Chain F: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.38: 4 residues within 4Å: Chain G: R.57, M.119, E.122 Chain O: R.125 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain G: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.43: 6 residues within 4Å: Chain H: R.117, I.121 Chain J: R.117, I.121 Chain L: R.117, I.121 Ligand excluded by PLIP SO4.44: 3 residues within 4Å: Chain H: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.45: 3 residues within 4Å: Chain H: R.57, M.119 Chain L: R.125 Ligand excluded by PLIP SO4.49: 3 residues within 4Å: Chain A: R.125 Chain I: R.57, M.119 Ligand excluded by PLIP SO4.50: 3 residues within 4Å: Chain I: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.54: 3 residues within 4Å: Chain H: R.125 Chain J: R.57, M.119 Ligand excluded by PLIP SO4.55: 3 residues within 4Å: Chain J: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.59: 3 residues within 4Å: Chain K: R.57, M.119 Chain S: R.125 Ligand excluded by PLIP SO4.60: 3 residues within 4Å: Chain K: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.64: 3 residues within 4Å: Chain J: R.125 Chain L: R.57, M.119 Ligand excluded by PLIP SO4.65: 3 residues within 4Å: Chain L: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.69: 3 residues within 4Å: Chain E: R.125 Chain M: R.57, M.119 Ligand excluded by PLIP SO4.70: 3 residues within 4Å: Chain M: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.71: 2 residues within 4Å: Chain M: S.110, H.112 Ligand excluded by PLIP SO4.75: 6 residues within 4Å: Chain N: R.117, I.121 Chain P: R.117, I.121 Chain R: R.117, I.121 Ligand excluded by PLIP SO4.76: 3 residues within 4Å: Chain N: R.57, M.119 Chain P: R.125 Ligand excluded by PLIP SO4.77: 3 residues within 4Å: Chain N: R.125 Chain R: R.57, M.119 Ligand excluded by PLIP SO4.78: 3 residues within 4Å: Chain N: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.82: 6 residues within 4Å: Chain G: R.117, I.121 Chain O: R.117, I.121 Chain W: R.117, I.121 Ligand excluded by PLIP SO4.83: 3 residues within 4Å: Chain O: R.57, M.119 Chain W: R.125 Ligand excluded by PLIP SO4.84: 3 residues within 4Å: Chain O: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.88: 3 residues within 4Å: Chain P: R.57, M.119 Chain R: R.125 Ligand excluded by PLIP SO4.89: 3 residues within 4Å: Chain P: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.93: 5 residues within 4Å: Chain A: R.117 Chain I: R.117, I.121 Chain Q: R.117, I.121 Ligand excluded by PLIP SO4.94: 3 residues within 4Å: Chain Q: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.95: 3 residues within 4Å: Chain I: R.125 Chain Q: R.57, M.119 Ligand excluded by PLIP SO4.99: 3 residues within 4Å: Chain R: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.103: 4 residues within 4Å: Chain C: R.125 Chain S: R.57, M.119, E.122 Ligand excluded by PLIP SO4.104: 3 residues within 4Å: Chain S: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.108: 6 residues within 4Å: Chain T: R.117, I.121 Chain V: R.117, I.121 Chain X: R.117, I.121 Ligand excluded by PLIP SO4.109: 3 residues within 4Å: Chain T: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.110: 3 residues within 4Å: Chain T: R.57, M.119 Chain X: R.125 Ligand excluded by PLIP SO4.114: 3 residues within 4Å: Chain M: R.125 Chain U: R.57, M.119 Ligand excluded by PLIP SO4.115: 3 residues within 4Å: Chain U: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.119: 3 residues within 4Å: Chain T: R.125 Chain V: R.57, M.119 Ligand excluded by PLIP SO4.120: 3 residues within 4Å: Chain V: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.124: 3 residues within 4Å: Chain G: R.125 Chain W: R.57, M.119 Ligand excluded by PLIP SO4.125: 3 residues within 4Å: Chain W: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.129: 3 residues within 4Å: Chain V: R.125 Chain X: R.57, M.119 Ligand excluded by PLIP SO4.130: 3 residues within 4Å: Chain X: G.145, L.146, Q.147 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Willies, S.C. et al., The Binding of Haem and Zinc in the 1.9 A X-Ray Structure of Escherichia Coli Bacterioferritin. J.Biol.Inorg.Chem. (2009)

Release Date

2008-11-04

Peptides

BACTERIOFERRITIN: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
A

N
B

O
C

P
D

Q
E

R
F

S
G

T
H

U
I

V
J

W
K

X
L

BACTERIOFERRITIN

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