SMTL ID : 2vzm.1 (1 other biounit)

Crystal structure of the narbomycin-bound PikC D50N mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 30 residues within 4Å: Chain A: K.92, M.112, L.113, H.120, R.124, F.131, I.177, I.259, L.260, A.263, G.264, T.267, T.268, L.271, P.309, V.310, A.313, T.314, R.316, A.366, F.367, G.368, I.371, H.372, C.374, I.375, G.376, L.379, A.380 Ligands: NRB.2 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:L.113, A:L.113, A:F.131, A:I.177, A:I.259, A:L.260, A:L.271, A:P.309, A:V.310, A:F.367, A:I.375, A:L.379, A:A.380 Hydrogen bonds: A:T.314 Water bridges: A:H.372 Salt bridges: A:K.92, A:H.120, A:R.124, A:R.316, A:H.372 Metal complexes: A:C.374

1 x NRB: NARBOMYCIN(Non-covalent)

NRB.2: 15 residues within 4Å: Chain A: E.105, L.113, F.198, V.199, M.211, I.259, A.263, E.266, T.267, T.314, Y.315, N.412, M.414, I.415 Ligands: HEM.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.113, A:F.198, A:F.198, A:V.199, A:I.259, A:T.314, A:I.415, A:I.415 Salt bridges: A:E.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., Analysis of Transient and Catalytic Desosamine Binding Pockets in Cytochrome P450 Pikc from Streptomyces Venezuelae. J.Biol.Chem. (2009)

Release Date

2008-08-12

Peptides

CYTOCHROME P450 MONOOXYGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME P450 MONOOXYGENASE

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