SMTL ID : 3zpi.1 (1 other biounit)

PikC D50N mutant in P21 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: K.92, M.112, L.113, H.120, R.124, F.131, A.263, G.264, T.267, T.268, L.271, P.309, V.310, A.313, T.314, R.316, A.366, F.367, G.368, I.371, H.372, C.374, I.375, G.376, A.380 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.113, A:L.113, A:F.131, A:A.263, A:L.271, A:P.309, A:V.310, A:F.367, A:F.367, A:I.375, A:A.380 Hydrogen bonds: A:T.314 Water bridges: A:H.372 Salt bridges: A:K.92, A:H.120, A:R.124, A:R.316, A:H.372 Metal complexes: A:C.374, H2O.15

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 2 residues within 4Å: Chain A: R.124, I.371 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.124 Water bridges: A:R.124 FMT.3: 4 residues within 4Å: Chain A: D.187, R.220, L.221, S.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.220 FMT.6: 3 residues within 4Å: Chain A: R.290, M.293, E.393 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.290, A:E.393 FMT.7: 4 residues within 4Å: Chain A: P.350, D.351, D.356, R.359 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.356, A:D.356, A:R.359, A:R.359 FMT.10: 4 residues within 4Å: Chain A: M.165, W.170, R.192, D.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.196 Water bridges: A:T.195, A:N.270

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: E.243 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.243 Water bridges: A:R.247, A:R.247 EDO.5: 3 residues within 4Å: Chain A: E.243, D.244 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.243 EDO.8: 5 residues within 4Å: Chain A: R.142, I.146, V.176, E.179, L.180 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.176 EDO.9: 6 residues within 4Å: Chain A: D.43, F.44, D.47, P.50, R.54 Ligands: TLA.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.43, A:R.54 EDO.11: 5 residues within 4Å: Chain A: D.47, Y.49, P.50, R.344, H.353 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.344 Water bridges: A:Y.49, A:R.344, A:H.353

1 x NA: SODIUM ION(Non-functional Binders)

NA.12: 5 residues within 4Å: Chain A: E.311, Y.410, P.411, N.412, I.415 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.311

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.13: 3 residues within 4Å: Chain A: P.50, R.54 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.54 Salt bridges: A:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Podust, L.M., Recognition of Synthetic Substrates by P450 Pikc. To be Published

Release Date

2014-03-19

Peptides

CYTOCHROME P450 HYDROXYLASE PIKC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME P450 HYDROXYLASE PIKC

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